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(-) Description

Title :  A NOVEL END-TO-END BINDING OF TWO NETROPSINS TO THE DNA DECAMER D(CCCCCIIIII)2
 
Authors :  X. Chen, S. T. Rao, K. Sekar, M. Sundaralingam
Date :  14 Jan 98  (Deposition) - 02 Dec 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  B-Dna/Rna, Double Helix, Double Drug In Minor Groove, Complexed With Drug, Modified, Mismatched (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Chen, S. N. Mitra, S. T. Rao, K. Sekar, M. Sundaralingam
A Novel End-To-End Binding Of Two Netropsins To The Dna Decamers D(Ccccciiiii)2, D(Cccbr5Cciiiii)2And D(Cbr5Cccciiiii)2.
Nucleic Acids Res. V. 26 5464 1998
PubMed-ID: 9826773  |  Reference-DOI: 10.1093/NAR/26.23.5464
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*CP*CP*(CBR)P*CP*IP*IP*IP*IP*I)-3')
    Chains: A, B, C, D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1CBR4Mod. Nucleotide5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2NT4Ligand/IonNETROPSIN
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CBR2Mod. Nucleotide5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2NT-1Ligand/IonNETROPSIN
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CBR2Mod. Nucleotide5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2NT-1Ligand/IonNETROPSIN

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDC A:1 , DC A:2 , DC A:3 , CBR A:4 , DC A:5 , DI A:6 , HOH A:61 , DC B:11 , DI B:18 , DI B:19 , DI B:20BINDING SITE FOR RESIDUE NT A 41
2AC2SOFTWAREDC A:1 , DI A:6 , DI A:7 , DI A:8 , DI A:9 , DI A:10 , HOH A:55 , HOH A:61 , HOH A:74 , DC B:12 , DC B:13 , CBR B:14 , DC B:15 , DI B:16BINDING SITE FOR RESIDUE NT A 42
3AC3SOFTWAREDC C:21 , DC C:22 , DC C:23 , CBR C:24 , DC C:25 , DI C:26 , NT C:44 , HOH C:53 , DC D:31 , DI D:36 , DI D:37 , DI D:38 , DI D:39 , DI D:40BINDING SITE FOR RESIDUE NT C 43
4AC4SOFTWAREDC C:21 , DI C:26 , DI C:27 , DI C:28 , DI C:29 , DI C:30 , NT C:43 , DC D:32 , DC D:33 , CBR D:34 , DC D:35 , DI D:36BINDING SITE FOR RESIDUE NT C 44

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 474D)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 474D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:10
                                         
                  474d A  1 CCCcCIIIII 10
                               |    10
                               |      
                               4-CBR  


Chain B from PDB  Type:DNA  Length:10
                                         
                  474d B 11 CCCcCIIIII 20
                               |    20
                              14-CBR  


Chain C from PDB  Type:DNA  Length:10
                                         
                  474d C 21 CCCcCIIIII 30
                               |    30
                              24-CBR  


Chain D from PDB  Type:DNA  Length:10
                                         
                  474d D 31 CCCcCIIIII 40
                               |    40
                              34-CBR
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 474D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 474D)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 474D)

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  474d
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