1GCC - JenaLib

Title :   SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE

Authors :   K. Yamasaki, M. D. Allen, M. Ohme-Takagi, M. Tateno, M. Suzuki

Date :   13 Mar 98 (Deposition) - 23 Mar 99 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B,C

Keywords :   Transcription Factor, Protein-Dna Complex, Ethylene Inducible, Complex (Transcription Factor/Dna), Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Allen, K. Yamasaki, M. Ohme-Takagi, M. Tateno, M. Suzuki
A Novel Mode Of Dna Recognition By A Beta-Sheet Revealed By The Solution Structure Of The Gcc-Box Binding Domain In Complex With Dna.
Embo J. V. 17 5484 1998
PubMed-ID: 9736626 | Reference-DOI: 10.1093/EMBOJ/17.18.5484
(for further references see the PDB file header)

Compounds

*Molecule 1 - DNA (5'-D(TPAPGPCPCPGPCPCPAPGPC)-3')**
	Chains	:	B
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 2 - DNA (5'-D(GPCPTPGPGPCPGPGPCPTPA)-3')**
	Chains	:	C
	Engineered	:	YES
	Synthetic	:	YES

Molecule 3 - ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
	Cell Line	:	BL21
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PAF104
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	469008
	Fragment	:	GCC-BOX BINDING DOMAIN
	Gene	:	ATERF1
	Organism Common	:	THALE CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Other Details	:	DNA-BINDING DOMAIN OF ATERF1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:63
 aligned with EF100_ARATH | O80337 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:63
                                   155       165       175       185       195       205   
          EF100_ARATH   146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 208
               SCOP domains d1gcca_ A: GCC-box binding domain                               SCOP domains
               CATH domains 1gccA00 A:144-206 GCC-box Binding Domain                        CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeeeee.....eeeeeeee..hhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -AP2_ERF  PDB: A:145-203 UniProt: 147-205                   --- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 1gcc A 144 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 206
                                   153       163       173       183       193       203

Chain B from PDB  Type:DNA  Length:11
                                           
                 1gcc B   3 TAGCCGCCAGC  13
                                    12

Chain C from PDB  Type:DNA  Length:11
                                           
                 1gcc C  14 GCTGGCGGCTA  24
                                    23

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

NMR Structure(hide GO term definitions)

Chain A (EF100_ARATH | O80337)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009873	ethylene-activated signaling pathway	A series of molecular signals generated by the reception of ethylene (ethene, C2H4) by a receptor and ending with modulation of a cellular process, e.g. transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0010200	response to chitin	A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0001944	vasculature development	The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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