Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2a - Page 2:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the radius of curvature (r).

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Number of structures: 98 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
426d	bd0004	E   |    H   |    B	11	nuc	diff	circular line	0.181	70
						single-kink line	0.208		16			6	5
369d	adh0103	E   |    H   |    B	8	nuc	diff	circular line	0.210	71
						single-kink line	0.212		13			5	3
						straight line	0.243
1dsm	------	E   |    H   |    B	11	nuc	NMR	circular line	0.244	72
						single-kink line	0.422		13			5	6
1l3v	pd0303	E   |    H   |    B	15	prot-nuc	diff	circular line	0.331	73
						single-kink line	0.373		21			6	9
						double-kink line	0.374		20	14	75	6	7	2
1n37	------	E   |    H   |    B	8	nuc	NMR	circular line	0.115	74
						single-kink line	0.194		13			4	4
216d	ghhb34	E   |    H   |    B	8	nuc	diff	circular line	0.230	74
						straight line	0.412
9icv	pde0111	E   |    H   |    B	7	prot-nuc	diff	circular line	0.190	74
						straight line	0.228
199d	------	E   |    H   |    B	9	nuc	NMR	circular line	0.137	75
						single-kink line	0.139		10			5	4
						straight line	0.231
204d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.344	75
						straight line	0.424
1bdt	pd0035	E   |    H   |    B	21	prot-nuc	diff	circular line	0.317	77
						double-kink line	0.433		15	17	-13	7	5	9
1jj6	pd0228	E   |    H   |    B	12	prot-nuc	diff	circular line	0.202	77
						single-kink line	0.319		16			5	7
115d	adhb11	E   |    H   |    B	8	nuc	diff	circular line	0.076	78
						straight line	0.169
						single-kink line	0.215		9			3	5
1bp7	pd0026	E   |    H   |    B	24	prot-nuc	diff	circular line	0.375	78
						double-kink line	0.529		18	22	-15	7	8	9
1k7a	pd0261	E   |    H   |    B	13	prot-nuc	diff	circular line	0.237	78
						single-kink line	0.292		16			7	6
						double-kink line	0.327		10	14	38	6	4	3
1nev	------	E   |    H   |    B	10	nuc	NMR	circular line	0.173	78
						single-kink line	0.224		13			5	5
8icx	pde085	E   |    H   |    B	7	prot-nuc	diff	circular line	0.209	78
						straight line	0.213
193d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.297	79
						single-kink line	0.374		12			4	4
372d	adh0106	E   |    H   |    B	8	nuc	diff	circular line	0.088	79
						single-kink line	0.176		9			4	4
						straight line	0.199
3ana	adh007	E   |    H   |    B	8	nuc	diff	circular line	0.149	79
						straight line	0.184
						single-kink line	0.203		11			5	3
5bna	ddl017	E   |    H   |    B	12	nuc	diff	circular line	0.148	79
						single-kink line	0.299		14			6	6
1dc0	bd0026	E   |    H   |    B	12	nuc	diff	circular line	0.052	80
						single-kink line	0.136		14			7	5
1hry	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.196	80
						straight line	0.341
1s9m	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
1sx9	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
2d95	adh027	E   |    H   |    B	8	nuc	diff	circular line	0.069	81
						single-kink line	0.124		8			4	4
						straight line	0.145
3bdp	pde0132	E   |    H   |    B	10	prot-nuc	diff	circular line	0.235	81
						single-kink line	0.344		12			4	6
9icb	pde092	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	81
						straight line	0.188
1hhx	------	E   |    H   |    B	9	nuc	NMR	circular line	0.105	82
						single-kink line	0.115		10			4	5
						straight line	0.178
1hrz	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.118	82
						straight line	0.291
1nkc	pd0384	E   |    H   |    B	15	prot-nuc	diff	circular line	0.104	82
						double-kink line	0.123		13	14	28	4	6	5
						single-kink line	0.280		17			8	7
195d	gdl030	E   |    H   |    B	12	nuc	diff	circular line	0.096	83
						single-kink line	0.126		15			6	6
1bwt	------	E   |    H   |    B	10	nuc	NMR	circular line	0.077	83
						single-kink line	0.158		11			5	5
1mis	------	E   |    H   |    B	8	nuc	NMR	circular line	0.058	83
						straight line	0.107
						single-kink line	0.138		9			3	5
8icg	pde068	E   |    H   |    B	7	prot-nuc	diff	circular line	0.111	83
						straight line	0.169
1bdv	pd0025	E   |    H   |    B	21	prot-nuc	diff	circular line	0.392	84
						double-kink line	0.499		15	15	-50	8	4	9
1kkv	------	E   |    H   |    B	10	nuc	NMR	circular line	0.059	84
						single-kink line	0.081		11			5	5
455d	bd0008	E   |    H   |    B	12	nuc	diff	circular line	0.094	84
						single-kink line	0.132		15			5	7
1n56	pd0362	E   |    H   |    B	12	prot-nuc	diff	circular line	0.213	88
						single-kink line	0.334		13			6	6
1njy	pd0374	E   |    H   |    B	11	prot-nuc	diff	circular line	0.232	88
						single-kink line	0.249		13			5	6
1nne	pd0388	E   |    H   |    B	11	prot-nuc	diff	circular line	0.218	90
						single-kink line	0.261		12			6	5
188d	adh057	E   |    H   |    B	8	nuc	diff	circular line	0.111	91
						straight line	0.138
						single-kink line	0.195		8			4	4
1cez	pd0086	E   |    H   |    B	13	prot-nuc	diff	circular line	0.327	92
						double-kink line	0.369		12	14	76	5	5	3
						single-kink line	0.431		14			6	7
1cyz	------	E   |    H   |    B	10	nuc	NMR	circular line	0.264	92
						single-kink line	0.383		11			4	6
1g8v	bd0046	E   |    H   |    B	12	nuc	diff	circular line	0.100	93
						single-kink line	0.224		14			4	8
1b1f	------	E   |    H   |    B	10	prot-nuc	model	circular line	0.155	94
						single-kink line	0.178		10			5	5
1r3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.183	94
						straight line	0.220
						single-kink line	0.269		10			5	3
1d28	bdl028	E   |    H   |    B	12	nuc	diff	circular line	0.088	96
						single-kink line	0.183		12			6	6
219d	------	E   |    H   |    B	10	nuc	NMR	circular line	0.037	96
						single-kink line	0.039		10			4	6
						straight line	0.169
316d	ddh071	E   |    H   |    B	8	nuc	diff	circular line	0.231	96
						straight line	0.370
1duf	------	E   |    H   |    B	12	nuc	NMR	circular line	0.006	97
						single-kink line	0.043		12			6	6
1g8u	bd0045	E   |    H   |    B	12	nuc	diff	circular line	0.094	97
						single-kink line	0.165		14			4	8
453d	dd0013	E   |    H   |    B	12	nuc	diff	circular line	0.083	98
						single-kink line	0.092		13			5	7
1fym	pd0184	E   |    H   |    B	12	prot-nuc	diff	circular line	0.010	99
						single-kink line	0.053		11			5	7
1hjb	pd0204	E   |    H   |    B	25	prot-nuc	diff	circular line	0.291	99
						double-kink line	0.295		21	10	13	9	8	8
1dne	gdl004	E   |    H   |    B	12	nuc	diff	circular line	0.243	100
						single-kink line	0.268		13			5	7
8icf	pde067	E   |    H   |    B	7	prot-nuc	diff	circular line	0.099	100
						straight line	0.126
119d	bdl042	E   |    H   |    B	12	nuc	diff	circular line	0.585	101
						single-kink line	0.647		12			6	6
9ice	pde094	E   |    H   |    B	7	prot-nuc	diff	circular line	0.104	101
						straight line	0.118
1gxp	------	E   |    H   |    B	22	prot-nuc	diff	circular line	0.370	103
						double-kink line	0.404		18	11	-16	7	8	7
8ict	pde081	E   |    H   |    B	7	prot-nuc	diff	circular line	0.092	103
						straight line	0.111
1a1l	pdt061	E   |    H   |    B	10	prot-nuc	diff	circular line	0.208	105
						single-kink line	0.211		11			6	4
						straight line	0.346
1d98	bdl006	E   |    H   |    B	12	nuc	diff	circular line	0.059	105
						single-kink line	0.103		12			5	7
1iu3	pd0297	E   |    H   |    B	9	prot-nuc	diff	circular line	0.217	105
						straight line	0.306
						single-kink line	0.359		8			5	4
1lp7	bd0057	E   |    H   |    B	12	nuc	diff	circular line	0.058	105
						single-kink line	0.117		11			5	7
271d	bdl075	E   |    H   |    B	12	nuc	diff	circular line	0.053	106
						single-kink line	0.098		11			5	7
1d29	bdl029	E   |    H   |    B	12	nuc	diff	circular line	0.065	107
						single-kink line	0.118		11			6	6
1d89	bdl047	E   |    H   |    B	12	nuc	diff	circular line	0.182	108
						single-kink line	0.203		14			8	4
1g7z	------	E   |    H   |    B	8	nuc	NMR	circular line	0.126	108
						straight line	0.134
						single-kink line	0.237		7			4	4
1jx4	pd0251	E   |    H   |    B	13	prot-nuc	diff	circular line	0.129	108
						single-kink line	0.146		12			6	7
						double-kink line	0.190		10	8	-89	5	2	6
170d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.639	110
						single-kink line	0.839		12			7	5
246d	ahh071	E   |    H   |    B	8	nuc	diff	circular line	0.069	110
						straight line	0.081
						single-kink line	0.131		7			5	3
448d	dd0008	E   |    H   |    B	12	nuc	diff	circular line	0.060	110
						single-kink line	0.088		11			6	6
1g75	bd0043	E   |    H   |    B	12	nuc	diff	circular line	0.065	112
						single-kink line	0.090		11			5	7
243d	adh070	E   |    H   |    B	8	nuc	diff	circular line	0.050	113
						single-kink line	0.089		7			4	4
						straight line	0.105
287d	bdl078	E   |    H   |    B	12	nuc	diff	circular line	0.110	113
						single-kink line	0.192		10			5	7
344d	adhb99	E   |    H   |    B	8	nuc	diff	circular line	0.072	113
						straight line	0.115
						single-kink line	0.126		7			4	4
431d	bd0006	E   |    H   |    B	8	nuc	diff	circular line	0.039	113
						single-kink line	0.080		7			4	4
						straight line	0.127
1fyl	pd0183	E   |    H   |    B	12	prot-nuc	diff	circular line	0.021	114
						single-kink line	0.064		10			6	6
1l3t	pd0301	E   |    H   |    B	10	prot-nuc	diff	circular line	0.209	114
						single-kink line	0.288		8			5	5
						straight line	0.312
1m6f	dd0052	E   |    H   |    B	12	nuc	diff	circular line	0.084	115
						single-kink line	0.084		11			5	7
1mq2	pd0343	E   |    H   |    B	10	prot-nuc	diff	circular line	0.160	115
						single-kink line	0.161		10			4	6
						straight line	0.301
202d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.366	115
						straight line	0.366
1jkq	pd0236	E   |    H   |    B	12	prot-nuc	diff	circular line	0.258	116
						single-kink line	0.310		10			6	6
1ley	gdl038	E   |    H   |    B	12	nuc	diff	circular line	0.099	116
						single-kink line	0.156		11			5	7
214d	------	E   |    H   |    B	11	nuc	NMR	circular line	0.149	116
						single-kink line	0.153		9			6	5
						straight line	0.278
1gat	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.102	117
						single-kink line	0.127		7			5	3
						straight line	0.140
1jj8	pd0229	E   |    H   |    B	12	prot-nuc	diff	circular line	0.141	117
						single-kink line	0.198		10			6	6
458d	bd0011	E   |    H   |    B	12	nuc	diff	circular line	0.106	117
						single-kink line	0.121		12			4	8
1g8n	bd0044	E   |    H   |    B	12	nuc	diff	circular line	0.063	118
						single-kink line	0.098		10			5	7
449d	dd0009	E   |    H   |    B	12	nuc	diff	circular line	0.059	118
						single-kink line	0.083		11			7	5
456d	bd0009	E   |    H   |    B	12	nuc	diff	circular line	0.056	118
						single-kink line	0.089		10			5	7
124d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.043	119
						single-kink line	0.053		8			2	6
						straight line	0.056
1le5	pd0307	E   |    H   |    B	11	prot-nuc	diff	circular line	0.081	120
						single-kink line	0.082		9			5	6
2dnd	gdl003	E   |    H   |    B	12	nuc	diff	circular line	0.151	121
						single-kink line	0.180		10			5	7
297d	bdlb82	E   |    H   |    B	12	nuc	diff	circular line	0.080	122
						single-kink line	0.130		9			6	6
303d	gdl048	E   |    H   |    B	12	nuc	diff	circular line	0.038	122
						single-kink line	0.070		10			5	7
8bna	gdl006	E   |    H   |    B	12	nuc	diff	circular line	0.141	122
						single-kink line	0.159		10			5	7
403d	bdd001	E   |    H   |    B	12	nuc	diff	circular line	0.068	123
						single-kink line	0.094		9			6	6

Abbreviations