193D - JenaLib

Title :   SOLUTION STRUCTURE OF A QUINOMYCIN BISINTERCALATOR-DNA COMPLEX

Authors :   H. Chen, D. J. Patel

Date :   30 Sep 94 (Deposition) - 27 Feb 95 (Release) - 27 Jul 11 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B,C  (4x)
NMR Structure *: A,B,C  (1x)

Keywords :   Bisintercalator, Depsipeptide, Quinoxaline, Thioacetal, Antibiotic, Antitumor, Dna-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Chen, D. J. Patel
Solution Structure Of A Quinomycin Bisintercalator-Dna Complex.
J. Mol. Biol. V. 246 164 1995
PubMed-ID: 7853395 | Reference-DOI: 10.1006/JMBI.1994.0074

Compounds

*Molecule 1 - DNA (5'-D(APCPAPCPGPTPGPT)-3')*
	Chains	:	A, B
	Engineered	:	YES
	Other Details	:	CHEMICALLY SYNTHESIZED
	Synthetic	:	YES

Molecule 2 - QUINOMYCIN
	Chains	:	C
	Engineered	:	YES
	Organism Scientific	:	STREPTOMYCES
	Other Details	:	CHEMICALLY SYNTHESIZED
	Synonym	:	QUINOMYCIN A, UK-63052
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 8)

NMR Structure (5, 8)

No.	Name	Count	Type	Full Name
1	CPC	2	Mod. Amino Acid	2-METHYL-1-METHYLAMINO-CYCLOPROPANE CARBOXYLIC ACID
2	DSN	2	Mod. Amino Acid	D-SERINE
3	HQU	2	Ligand/Ion	3-HYDROXYQUINALDIC ACID
4	NCY	1	Mod. Amino Acid	N-METHYLCYSTEINE
5	NYB	1	Mod. Amino Acid	N-METHYL-S-[(1R)-1-METHYLPROPYL]-L-CYSTEINE

NMR Structure * (5, 8)

No.	Name	Count	Type	Full Name
1	CPC	2	Mod. Amino Acid	2-METHYL-1-METHYLAMINO-CYCLOPROPANE CARBOXYLIC ACID
2	DSN	2	Mod. Amino Acid	D-SERINE
3	HQU	2	Ligand/Ion	3-HYDROXYQUINALDIC ACID
4	NCY	1	Mod. Amino Acid	N-METHYLCYSTEINE
5	NYB	1	Mod. Amino Acid	N-METHYL-S-[(1R)-1-METHYLPROPYL]-L-CYSTEINE

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:8
                                      
                   193d A 1 ACACGTGT 8

Chain B from PDB  Type:DNA  Length:8
                                      
                   193d B 1 ACACGTGT 8

Chain C from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   193d C 1 xAxxxAxx 8
                            | ||| ||
                            1-DSN ||
                              3-NYB|
                               4-CPC
                                5-DSN
                                  7-NCY
                                   8-CPC

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	193d
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

185d	SOLUTION STRUCTURE OF D(GACGTC) COMPLEXED WITH TRIOSTIN A
1pfe	CRYSTAL STRUCTURE OF D(GCGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P6322
1vs2	CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH TRIOSIN A
1xvk	CRYSTAL STRUCTURE OF D(GCGTACGC) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632
1xvn	CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P632
1xvr	CRYSTAL STRUCTURE OF D(CGTACG) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP C21
2adw	CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P42212
2da8	SOLUTION STRUCTURE OF D(GATATC) COMPLEXED WITH A MODIFIED TRIOSTIN A AT POSITIONS 4 AND 8
3go3	CRYSTAL STRUCTURE OF D(ACGTACGT) COMPLEXED WITH ECHINOMYCIN - SPACE GROUP P41212

Description