Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2a - Page 3:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the radius of curvature (r).

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Number of structures: 99 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
113d	bdl009	E   |    H   |    B	12	nuc	diff	circular line	0.032	125
						single-kink line	0.053		10			6	6
459d	dd0014	E   |    H   |    B	12	nuc	diff	circular line	0.055	125
						single-kink line	0.076		10			5	7
7bna	bdl005	E   |    H   |    B	12	nuc	diff	circular line	0.074	125
						single-kink line	0.078		10			5	7
1rxb	arh064	E   |    H   |    B	8	nuc	diff	circular line	0.015	126
						single-kink line	0.035		6			3	5
						straight line	0.050
1bdn	bdl015	E   |    H   |    B	12	nuc	diff	circular line	0.108	127
						single-kink line	0.183		9			5	7
1d49	bdj031	E   |    H   |    B	10	nuc	diff	circular line	0.188	127
						single-kink line	0.195		8			5	5
						straight line	0.291
302d	gdl047	E   |    H   |    B	12	nuc	diff	circular line	0.042	127
						single-kink line	0.070		10			5	7
1ftd	dd0036	E   |    H   |    B	12	nuc	diff	circular line	0.073	128
						single-kink line	0.089		10			5	7
1g3v	bd0042	E   |    H   |    B	8	nuc	diff	circular line	0.090	128
						straight line	0.115
						single-kink line	0.187		6			3	5
1k4t	pd0256	E   |    H   |    B	10	prot-nuc	diff	circular line	0.041	128
						single-kink line	0.044		8			5	5
						straight line	0.184
2ezd	------	E   |    H   |    B	12	prot-nuc	NMR	circular line	0.038	128
						single-kink line	0.127		10			6	6
1d64	gdl015	E   |    H   |    B	12	nuc	diff	circular line	0.073	129
						single-kink line	0.086		10			5	7
1lex	gdl037	E   |    H   |    B	12	nuc	diff	circular line	0.094	129
						single-kink line	0.143		10			5	7
1bc8	pd0020	E   |    H   |    B	9	prot-nuc	diff	circular line	0.094	131
						single-kink line	0.118		8			6	3
						straight line	0.150
1gip	------	E   |    H   |    B	12	nuc	NMR	circular line	0.139	131
						single-kink line	0.143		9			6	6
1jgg	pdt031	E   |    H   |    B	10	prot-nuc	diff	circular line	0.276	131
						single-kink line	0.286		9			4	6
						straight line	0.356
1prp	gdl023	E   |    H   |    B	12	nuc	diff	circular line	0.073	131
						single-kink line	0.082		10			5	7
1edr	bd0031	E   |    H   |    B	12	nuc	diff	circular line	0.050	132
						single-kink line	0.089		9			5	7
1qv4	dd0059	E   |    H   |    B	12	nuc	diff	circular line	0.066	132
						single-kink line	0.089		9			5	7
1vzk	------	E   |    H   |    B	12	nuc	diff	circular line	0.080	132
						single-kink line	0.109		9			5	7
1qc1	bd0015	E   |    H   |    B	10	nuc	diff	circular line	0.058	133
						single-kink line	0.093		7			5	5
						straight line	0.210
267d	gdlb41	E   |    H   |    B	12	nuc	diff	circular line	0.087	133
						single-kink line	0.102		9			5	7
2bdp	pde0131	E   |    H   |    B	9	prot-nuc	diff	circular line	0.064	133
						single-kink line	0.075		8			6	3
						straight line	0.122
264d	gdl026	E   |    H   |    B	12	nuc	diff	circular line	0.075	134
						single-kink line	0.092		9			5	7
363d	adls105	E   |    H   |    B	12	nuc	diff	circular line	0.183	134
						single-kink line	0.198		9			8	4
						straight line	0.289
407d	bdd002	E   |    H   |    B	10	nuc	diff	circular line	0.171	134
						single-kink line	0.173		8			5	5
						straight line	0.279
259d	arh074	E   |    H   |    B	8	nuc	diff	circular line	0.016	135
						single-kink line	0.029		5			4	4
						straight line	0.044
1d63	gdl016	E   |    H   |    B	12	nuc	diff	circular line	0.100	136
						single-kink line	0.132		9			5	7
1d86	gdl018	E   |    H   |    B	12	nuc	diff	circular line	0.080	137
						single-kink line	0.094		9			5	7
2eze	------	E   |    H   |    B	12	prot-nuc	NMR	circular line	0.048	137
						single-kink line	0.079		10			5	7
1d23	bdj025	E   |    H   |    B	10	nuc	diff	circular line	0.296	138
						single-kink line	0.315		8			5	5
						straight line	0.345
1dl4	------	E   |    H   |    B	11	nuc	NMR	circular line	0.189	139
						single-kink line	0.217		10			6	5
						straight line	0.352
1d77	bdlb40	E   |    H   |    B	12	nuc	diff	circular line	0.140	140
						single-kink line	0.157		10			4	8
1fzx	------	E   |    H   |    B	12	nuc	NMR	circular line	0.020	140
						single-kink line	0.056		7			6	6
						straight line	0.185
432d	dd0002	E   |    H   |    B	8	nuc	diff	circular line	0.116	140
						straight line	0.128
						single-kink line	0.211		7			5	3
1d27	bdlb26	E   |    H   |    B	12	nuc	diff	circular line	0.036	141
						single-kink line	0.073		8			6	6
1kkw	------	E   |    H   |    B	10	nuc	NMR	circular line	0.232	142
						straight line	0.245
						single-kink line	0.291		9			3	7
1nk8	pd0381	E   |    H   |    B	11	prot-nuc	diff	circular line	0.115	143
						single-kink line	0.129		8			5	6
						straight line	0.233
1a1h	pdt057	E   |    H   |    B	10	prot-nuc	diff	circular line	0.182	147
						single-kink line	0.193		8			6	4
						straight line	0.229
249d	bdl070	E   |    H   |    B	11	nuc	diff	circular line	0.168	147
						single-kink line	0.222		7			5	6
						straight line	0.313
270d	bdlb74	E   |    H   |    B	12	nuc	diff	circular line	0.046	147
						single-kink line	0.066		8			5	7
1g2d	pd0186	E   |    H   |    B	15	prot-nuc	diff	circular line	0.161	149
						double-kink line	0.212		11	9	46	3	7	5
						single-kink line	0.262		9			7	8
2d25	bdjb27	E   |    H   |    B	10	nuc	diff	circular line	0.346	150
						straight line	0.372
						single-kink line	0.422		10			7	3
1fiu	pd0177	E   |    H   |    B	10	prot-nuc	diff	circular line	0.326	151
						single-kink line	0.341		9			6	3
						straight line	0.364
1fky	------	E   |    H   |    B	11	nuc	NMR	circular line	0.021	151
						single-kink line	0.033		7			5	6
						straight line	0.160
447d	dd0007	E   |    H   |    B	12	nuc	diff	circular line	0.073	151
						single-kink line	0.120		7			6	6
1ilc	bd0052	E   |    H   |    B	12	nuc	diff	circular line	0.127	152
						single-kink line	0.151		8			5	7
						straight line	0.303
1cs2	------	E   |    H   |    B	12	nuc	NMR	circular line	0.110	153
						single-kink line	0.122		8			7	5
						straight line	0.279
1j8l	bd0053	E   |    H   |    B	12	nuc	diff	circular line	0.073	153
						single-kink line	0.100		8			5	7
						straight line	0.266
1g2f	pd0187	E   |    H   |    B	15	prot-nuc	diff	circular line	0.150	154
						double-kink line	0.167		10	9	47	3	7	5
						single-kink line	0.205		10			9	6
263d	gdl039	E   |    H   |    B	12	nuc	diff	circular line	0.068	155
						single-kink line	0.101		8			5	7
1dou	bd0029	E   |    H   |    B	12	nuc	diff	circular line	0.071	162
						single-kink line	0.072		8			5	7
						straight line	0.249
457d	bd0010	E   |    H   |    B	12	nuc	diff	circular line	0.054	162
						single-kink line	0.106		7			5	7
						straight line	0.236
1naj	------	E   |    H   |    B	12	nuc	NMR	circular line	0.019	163
						single-kink line	0.019		7			6	6
						straight line	0.177
1a1k	pdt058	E   |    H   |    B	10	prot-nuc	diff	circular line	0.083	164
						single-kink line	0.087		6			6	4
						straight line	0.140
1g3x	dd0037	E   |    H   |    B	12	prot-nuc	diff	circular line	0.182	166
						single-kink line	0.215		8			4	7
						straight line	0.321
428d	bd0005	E   |    H   |    B	12	nuc	diff	circular line	0.074	166
						single-kink line	0.081		8			5	7
						straight line	0.239
2dau	------	E   |    H   |    B	12	nuc	NMR	circular line	0.186	169
						single-kink line	0.206		19			2	10
						straight line	0.294
1d65	bdl038	E   |    H   |    B	12	nuc	diff	circular line	0.057	172
						single-kink line	0.073		7			5	7
						straight line	0.226
1d68	------	E   |    H   |    B	10	nuc	NMR	circular line	0.140	173
						straight line	0.144
						single-kink line	0.161		5			5	5
266d	bdlb73	E   |    H   |    B	12	nuc	diff	circular line	0.042	174
						single-kink line	0.058		7			6	6
						straight line	0.206
298d	gdl044	E   |    H   |    B	12	nuc	diff	circular line	0.150	174
						single-kink line	0.153		9			4	8
						straight line	0.288
328d	gdl053	E   |    H   |    B	12	nuc	diff	circular line	0.059	177
						single-kink line	0.080		7			5	7
						straight line	0.216
355d	bdl084	E   |    H   |    B	12	nuc	diff	circular line	0.082	177
						single-kink line	0.088		7			5	7
						straight line	0.219
1pyj	------	E   |    H   |    B	11	nuc	NMR	circular line	0.071	178
						single-kink line	0.074		6			5	6
						straight line	0.135
1fkz	------	E   |    H   |    B	11	nuc	NMR	circular line	0.021	179
						single-kink line	0.048		6			6	5
						straight line	0.117
1fq2	bd0041	E   |    H   |    B	12	nuc	diff	circular line	0.079	181
						single-kink line	0.086		7			5	7
						straight line	0.219
1jgr	bd0054	E   |    H   |    B	12	nuc	diff	circular line	0.071	183
						single-kink line	0.079		7			4	8
						straight line	0.208
1bjd	------	E   |    H   |    B	12	nuc	NMR	circular line	0.024	184
						single-kink line	0.041		6			6	6
						straight line	0.126
1agh	------	E   |    H   |    B	11	nuc	NMR	circular line	0.025	187
						single-kink line	0.026		6			5	6
						straight line	0.105
1bc7	pd0027	E   |    H   |    B	11	prot-nuc	diff	circular line	0.159	188
						straight line	0.198
						single-kink line	0.201		6			7	4
1cvy	dd0021	E   |    H   |    B	10	nuc	diff	circular line	0.136	188
						single-kink line	0.153		6			5	5
						straight line	0.183
3bna	bdlb03	E   |    H   |    B	12	nuc	diff	circular line	0.098	189
						single-kink line	0.100		8			4	8
						straight line	0.225
1dvl	dd0024	E   |    H   |    B	10	nuc	diff	circular line	0.126	191
						single-kink line	0.145		6			5	5
						straight line	0.163
286d	bdjb77	E   |    H   |    B	10	nuc	diff	circular line	0.091	192
						single-kink line	0.092		6			5	5
						straight line	0.132
1ikk	bd0051	E   |    H   |    B	10	nuc	diff	circular line	0.097	197
						single-kink line	0.112		5			4	5
						straight line	0.134
1rvi	------	E   |    H   |    B	12	nuc	NMR	circular line	0.107	199
						single-kink line	0.157		7			4	8
						straight line	0.215
1jk1	pd0230	E   |    H   |    B	10	prot-nuc	diff	circular line	0.137	200
						straight line	0.154
						single-kink line	0.157		5			5	5
265d	bdlb72	E   |    H   |    B	12	nuc	diff	circular line	0.042	204
						single-kink line	0.069		5			6	6
						straight line	0.147
269d	gdlb43	E   |    H   |    B	12	nuc	diff	circular line	0.041	207
						single-kink line	0.059		6			5	7
						straight line	0.151
1d43	gdl010	E   |    H   |    B	12	nuc	diff	circular line	0.067	213
						single-kink line	0.077		7			8	4
						straight line	0.169
1odh	------	E   |    H   |    B	13	prot-nuc	diff	circular line	0.153	213
						single-kink line	0.166		6			6	7
						straight line	0.249
						double-kink line	0.300		7	10	-173	6	6	1
167d	bdj055	E   |    H   |    B	10	nuc	diff	circular line	0.068	216
						single-kink line	0.076		7			7	2
						straight line	0.103
296d	gdl028	E   |    H   |    B	12	nuc	diff	circular line	0.070	219
						single-kink line	0.079		6			4	8
						straight line	0.168
1d44	gdl011	E   |    H   |    B	12	nuc	diff	circular line	0.059	222
						single-kink line	0.094		5			7	5
						straight line	0.153
1qrh	pd0062	E   |    H   |    B	12	prot-nuc	diff	circular line	0.223	222
						single-kink line	0.254		6			4	7
						straight line	0.302
445d	dd0006	E   |    H   |    B	12	nuc	diff	circular line	0.060	223
						single-kink line	0.069		6			5	7
						straight line	0.155
477d	bd0019	E   |    H   |    B	10	nuc	diff	circular line	0.051	227
						single-kink line	0.067		5			4	6
						straight line	0.081
285d	bdlb76	E   |    H   |    B	12	nuc	diff	circular line	0.142	243
						single-kink line	0.185		6			4	8
						straight line	0.193
463d	bd0014	E   |    H   |    B	10	nuc	diff	circular line	0.052	245
						single-kink line	0.056		5			3	7
						straight line	0.075
121d	gdl014	E   |    H   |    B	12	nuc	diff	circular line	0.121	261
						single-kink line	0.139		5			4	8
						straight line	0.166
109d	gdl033	E   |    H   |    B	12	nuc	diff	circular line	0.073	263
						single-kink line	0.098		5			5	7
						straight line	0.136
1g14	------	E   |    H   |    B	12	nuc	NMR	circular line	0.049	268
						single-kink line	0.063		4			7	5
						straight line	0.082
1pyi	pdt017	E   |    H   |    B	14	prot-nuc	diff	circular line	0.360	277
						single-kink line	0.385		6			9	5
						double-kink line	0.402		6	14	-122	5	6	2
						straight line	0.403
1lrr	pd0315	E   |    H   |    B	12	prot-nuc	diff	circular line	0.212	294
						straight line	0.223
						single-kink line	0.236		4			6	6
1mse	------	E   |    H   |    B	11	prot-nuc	NMR	circular line	0.089	322
						single-kink line	0.090		5			7	3
						straight line	0.092
1cgc	bdj039	E   |    H   |    B	10	nuc	diff	circular line	0.067	336
						single-kink line	0.072		4			6	3
						straight line	0.073
1d60	bdjb43	E   |    H   |    B	10	nuc	diff	circular line	0.039	340
						single-kink line	0.045		3			5	4
						straight line	0.049
1by4	pd0071	E   |    H   |    B	15	prot-nuc	diff	circular line	0.205	424
						single-kink line	0.213		6			11	4
						straight line	0.239
						double-kink line	0.349		6	9	-165	7	2	6

Abbreviations