Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2a - Page 1:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the radius of curvature (r).

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Number of structures: 98 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1d87	ahj043	E   |    H   |    B	10	nuc	diff	circular line	0.411	20
						single-kink line	0.572		48			5	5
324d	adjb85	E   |    H   |    B	10	nuc	diff	circular line	0.344	20
						single-kink line	0.487		44			5	5
1dnx	ah0009	E   |    H   |    B	10	nuc	diff	circular line	0.376	21
						single-kink line	0.574		39			5	5
1guc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.426	23
						single-kink line	0.499		29			4	4
1vol	pdt032	E   |    H   |    B	16	prot-nuc	diff	circular line	0.703	23
						double-kink line	0.733		41	46	34	6	5	5
100d	ahj060	E   |    H   |    B	10	nuc	diff	circular line	0.416	24
						single-kink line	0.603		34			5	5
1d92	adh019	E   |    H   |    B	8	nuc	diff	circular line	0.291	24
						single-kink line	0.457		30			4	4
485d	ar0019	E   |    H   |    B	8	nuc	diff	circular line	0.526	24
						single-kink line	0.534		30			4	4
326d	adjb87	E   |    H   |    B	10	nuc	diff	circular line	0.466	25
						single-kink line	0.472		35			5	5
240d	adj069	E   |    H   |    B	10	nuc	diff	circular line	0.285	26
						single-kink line	0.328		36			5	5
1d13	adj022	E   |    H   |    B	10	nuc	diff	circular line	0.120	27
						single-kink line	0.154		32			5	5
220d	adj066	E   |    H   |    B	10	nuc	diff	circular line	0.121	28
						single-kink line	0.154		31			5	5
161d	ahj052	E   |    H   |    B	10	nuc	diff	circular line	0.273	30
						single-kink line	0.354		29			5	5
323d	adjb84	E   |    H   |    B	10	nuc	diff	circular line	0.332	30
						single-kink line	0.345		29			5	5
1d90	adhb17	E   |    H   |    B	8	nuc	diff	circular line	0.247	31
						single-kink line	0.427		24			4	4
1d91	adh018	E   |    H   |    B	8	nuc	diff	circular line	0.190	31
						single-kink line	0.217		24			4	4
1srs	pdt021	E   |    H   |    B	18	prot-nuc	diff	circular line	0.554	31
						double-kink line	0.603		39	41	-20	5	7	6
160d	adj049	E   |    H   |    B	10	nuc	diff	circular line	0.228	32
						single-kink line	0.270		27			5	5
1qph	ad0005	E   |    H   |    B	12	nuc	diff	circular line	0.110	32
						single-kink line	0.168		33			6	6
319d	adjb80	E   |    H   |    B	10	nuc	diff	circular line	0.358	32
						single-kink line	0.376		27			5	5
398d	ahh0114	E   |    H   |    B	8	nuc	diff	circular line	0.179	33
						single-kink line	0.348		20			4	4
175d	------	E   |    H   |    B	10	nuc	NMR	circular line	0.441	34
						single-kink line	0.464		29			5	5
1bps	------	E   |    H   |    B	9	nuc	NMR	circular line	0.410	34
						single-kink line	0.487		30			5	4
140d	------	E   |    H   |    B	13	nuc	NMR	circular line	0.138	35
						double-kink line	0.141		17	22	-22	5	3	5
						single-kink line	0.181		34			6	7
142d	------	E   |    H   |    B	13	nuc	NMR	circular line	0.116	36
						double-kink line	0.152		17	19	-22	5	3	5
						single-kink line	0.167		32			6	7
1dnz	ad0006	E   |    H   |    B	10	nuc	diff	circular line	0.121	36
						single-kink line	0.125		23			5	5
1fyy	------	E   |    H   |    B	12	nuc	NMR	circular line	1.380	37
						single-kink line	1.548		39			6	6
434d	ar0009	E   |    H   |    B	7	nuc	diff	circular line	0.186	37
						straight line	0.374
212d	adj065	E   |    H   |    B	10	nuc	diff	circular line	0.072	38
						single-kink line	0.094		22			5	5
333d	arhb90	E   |    H   |    B	8	nuc	diff	circular line	0.065	39
						single-kink line	0.097		16			4	4
168d	ahjs55	E   |    H   |    B	10	nuc	diff	circular line	0.119	40
						single-kink line	0.185		20			5	5
1o9m	------	E   |    H   |    B	8	nuc	diff	circular line	0.367	40
						straight line	0.556
1zqq	pde043	E   |    H   |    B	7	prot-nuc	diff	circular line	0.609	40
						straight line	0.746
107d	------	E   |    H   |    B	7	nuc	NMR	circular line	0.608	41
						straight line	0.626
1huo	pd0196	E   |    H   |    B	7	prot-nuc	diff	circular line	0.508	41
						straight line	0.661
1l3m	------	E   |    H   |    B	12	nuc	NMR	circular line	0.516	41
						single-kink line	0.587		33			8	4
368d	adh0102	E   |    H   |    B	8	nuc	diff	circular line	0.095	41
						single-kink line	0.183		16			4	4
1d70	------	E   |    H   |    B	8	nuc	NMR	circular line	0.078	42
						single-kink line	0.109		17			4	4
1gtc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.036	42
						single-kink line	0.190		15			4	4
1lcd	------	E   |    H   |    B	11	prot-nuc	NMR	circular line	0.137	43
						single-kink line	0.290		24			5	6
1qai	pd0126	E   |    H   |    B	8	prot-nuc	diff	circular line	0.398	43
						single-kink line	0.511		20			3	5
1bp8	------	E   |    H   |    B	8	nuc	NMR	circular line	0.035	44
						single-kink line	0.105		17			4	4
2bpg	pde012	E   |    H   |    B	7	prot-nuc	diff	circular line	0.350	44
						straight line	0.523
117d	adl046	E   |    H   |    B	12	nuc	diff	circular line	0.113	45
						single-kink line	0.176		22			6	6
1d3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.155	45
						single-kink line	0.351		17			4	4
1dcr	bd0027	E   |    H   |    B	9	nuc	diff	circular line	0.301	46
						single-kink line	0.316		22			4	5
1qes	------	E   |    H   |    B	8	nuc	NMR	circular line	0.261	46
						straight line	0.319
464d	ar0014	E   |    H   |    B	7	nuc	diff	circular line	0.168	46
						straight line	0.269
1esg	pd0139	E   |    H   |    B	8	prot-nuc	diff	circular line	0.102	48
						single-kink line	0.202		17			4	4
171d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.398	49
						single-kink line	0.479		25			6	6
2ana	adh006	E   |    H   |    B	8	nuc	diff	circular line	0.079	49
						single-kink line	0.173		14			4	4
1m77	ad0026	E   |    H   |    B	10	nuc	diff	circular line	0.271	50
						single-kink line	0.446		17			4	6
1p7d	pd0428	E   |    H   |    B	13	prot-nuc	diff	circular line	0.110	50
						double-kink line	0.182		15	15	16	5	4	4
						single-kink line	0.198		25			7	6
116d	adl045	E   |    H   |    B	12	nuc	diff	circular line	0.009	51
						single-kink line	0.083		19			6	6
1dsa	------	E   |    H   |    B	11	nuc	NMR	circular line	0.550	52
						single-kink line	0.557		21			6	5
1hlo	pdt042	E   |    H   |    B	11	prot-nuc	diff	circular line	0.292	52
						single-kink line	0.357		22			6	5
144d	gdlb24	E   |    H   |    B	12	nuc	diff	circular line	0.189	53
						single-kink line	0.291		22			6	6
1al5	------	E   |    H   |    B	12	nuc	NMR	circular line	0.027	53
						single-kink line	0.075		18			5	7
1d79	adh039	E   |    H   |    B	8	nuc	diff	circular line	0.089	53
						single-kink line	0.150		13			4	4
1j47	------	E   |    H   |    B	14	prot-nuc	NMR	circular line	0.113	54
						double-kink line	0.158		12	21	-6	5	4	5
						single-kink line	0.202		28			7	7
1rmx	------	E   |    H   |    B	10	nuc	NMR	circular line	0.175	54
						single-kink line	0.201		17			5	5
317d	adh078	E   |    H   |    B	8	nuc	diff	circular line	0.168	54
						single-kink line	0.307		13			4	4
1o3s	pd0400	E   |    H   |    B	11	prot-nuc	diff	circular line	0.515	55
						single-kink line	0.558		20			6	5
1zqe	pde031	E   |    H   |    B	7	prot-nuc	diff	circular line	0.391	55
						straight line	0.456
1d78	adh038	E   |    H   |    B	8	nuc	diff	circular line	0.088	56
						single-kink line	0.145		12			4	4
						straight line	0.276
1f4s	------	E   |    H   |    B	10	prot-nuc	NMR	circular line	0.769	56
						single-kink line	0.809		21			6	4
1rvh	------	E   |    H   |    B	12	nuc	NMR	circular line	0.224	57
						single-kink line	0.281		21			6	6
281d	adh076	E   |    H   |    B	8	nuc	diff	circular line	0.053	57
						single-kink line	0.193		13			3	5
1dnk	pde005	E   |    H   |    B	7	prot-nuc	diff	circular line	0.153	58
						straight line	0.301
1mow	pd0342	E   |    H   |    B	22	prot-nuc	diff	circular line	0.493	58
						double-kink line	0.598		13	33	20	6	6	10
1nke	pd0385	E   |    H   |    B	11	prot-nuc	diff	circular line	0.278	58
						single-kink line	0.339		19			5	6
104d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.111	59
						single-kink line	0.250		15			5	7
1m97	------	E   |    H   |    B	9	prot-nuc	model	circular line	0.208	59
						single-kink line	0.400		14			4	5
1tn9	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.446	59
						double-kink line	0.547		13	24	43	3	6	4
3bam	pd0031	E   |    H   |    B	10	prot-nuc	diff	circular line	1.146	60
						single-kink line	1.321		18			4	6
1zqh	pde034	E   |    H   |    B	7	prot-nuc	diff	circular line	0.364	63
						straight line	0.364
8ick	pde072	E   |    H   |    B	7	prot-nuc	diff	circular line	0.315	63
						straight line	0.328
1b0s	------	E   |    H   |    B	10	nuc	NMR	circular line	0.144	64
						single-kink line	0.215		15			5	5
1bg1	pd0028	E   |    H   |    B	17	prot-nuc	diff	circular line	0.203	64
						double-kink line	0.284		16	16	-11	6	5	6
						single-kink line	0.356		25			8	9
1d42	------	E   |    H   |    B	8	nuc	NMR	circular line	0.210	64
						straight line	0.305
1mjp	pd0247	E   |    H   |    B	9	prot-nuc	diff	circular line	0.105	64
						single-kink line	0.156		14			5	4
6cro	pdr053	E   |    H   |    B	19	prot-nuc	diff	circular line	0.184	64
						double-kink line	0.231		23	20	4	6	7	6
7gat	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.121	64
						double-kink line	0.128		13	15	-33	4	4	5
						single-kink line	0.251		22			7	6
8ici	pde070	E   |    H   |    B	7	prot-nuc	diff	circular line	0.265	64
						straight line	0.306
9ich	pde097	E   |    H   |    B	7	prot-nuc	diff	circular line	0.141	64
						straight line	0.284
9icc	pde093	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	66
						straight line	0.245
0an8	adh010	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
1d93	adh020	E   |    H   |    B	8	nuc	diff	circular line	0.113	67
						single-kink line	0.252		11			4	4
						straight line	0.291
1jkr	pd0237	E   |    H   |    B	12	prot-nuc	diff	circular line	0.189	67
						single-kink line	0.217		17			6	6
1mjm	pd0245	E   |    H   |    B	10	prot-nuc	diff	circular line	0.136	67
						single-kink line	0.151		15			5	5
1vj4	------	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
1zqm	pde039	E   |    H   |    B	7	prot-nuc	diff	circular line	0.305	67
						straight line	0.306
1iv6	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.184	68
						double-kink line	0.201		17	13	-62	4	6	3
						single-kink line	0.244		17			6	7
1a3q	pdr032	E   |    H   |    B	11	prot-nuc	diff	circular line	0.211	69
						single-kink line	0.222		16			6	5
1jko	pd0234	E   |    H   |    B	12	prot-nuc	diff	circular line	0.282	69
						single-kink line	0.298		18			5	7
1ea4	pd0479	E   |    H   |    B	20	prot-nuc	diff	circular line	0.159	70
						double-kink line	0.240		19	19	-14	7	7	6
1jkp	pd0235	E   |    H   |    B	12	prot-nuc	diff	circular line	0.223	70
						single-kink line	0.261		16			6	6
1qcu	ar0020	E   |    H   |    B	11	nuc	diff	circular line	0.127	70
						single-kink line	0.155		12			6	5

Abbreviations