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(-) Description

Title :  (-)-DUOCARMYCIN SA COVALENTLY LINKED TO DUPLEX DNA
 
Authors :  J. A. Smith, D. A. Case, W. J. Chazin
Date :  27 Mar 99  (Deposition) - 02 Apr 99  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
Keywords :  Duocarmycin, Dna, Minor Groove Binding, Antitumor Agent, Drug-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Smith, G. Bifulco, D. A. Case, D. L. Boger, L. Gomez-Paloma, W. J. Chazin
The Structural Basis For In Situ Activation Of Dna Alkylation By Duocarmycin Sa
J. Mol. Biol. V. 300 1195 2000
PubMed-ID: 10903864  |  Reference-DOI: 10.1006/JMBI.2000.3887
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*AP*CP*TP*AP*AP*TP*TP*GP*AP*C)-3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*GP*TP*CP*AP*AP*TP*TP*AP*GP*TP*C)-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1DSA1Ligand/Ion4-HYDROXY-8-METHYL-6-(4,5,6-TRIMETHOXY-1H-INDOLE-2-CARBONYL)-3,6,7,8-TETRAHYDRO-3,6-DIAZA-AS-INDACENE-2-CARBOXYLIC ACID METHYL ESTER

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:5 , DA A:6 , DT A:7 , DT A:8 , DT B:17 , DT B:18 , DA B:19 , DG B:20 , DT B:21BINDING SITE FOR RESIDUE DSA A 23

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1DSM)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1DSM)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  1dsm A  1 GACTAATTGAC 11
                                    10 

Chain B from PDB  Type:DNA  Length:11
                                          
                  1dsm B 12 GTCAATTAGTC 22
                                    21 

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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