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(-) Description

Title :  CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F SINGLE-CHAIN 9-24 DS-CAV1 VARIANT.
 
Authors :  M. G. Joyce, B. Zhang, J. R. Mascola, P. D. Kwong
Date :  24 May 16  (Deposition) - 28 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  F
Biol. Unit 1:  F  (3x)
Keywords :  Respiratory Syncytial Virus, Prefusion, Vaccine, Stabilized, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. G. Joyce, B. Zhang, L. Ou, M. Chen, G. Y. Chuang, A. Druz, W. P. Kong, Y. T. Lai, E. J. Rundlet, Y. Tsybovsky, Y. Yang, I. S. Georgiev, M. Guttman, C. R. Lees, M. Pancera, M. Sastry, C. Soto, G. B. Stewart-Jones, P. V. Thomas, J. G. Van Galen, U. Baxa, K. K. Lee, J. R. Mascola, B. S. Graham, P. D. Kwong
Iterative Structure-Based Improvement Of A Fusion-Glycoprotein Vaccine Against Rsv.
Nat. Struct. Mol. Biol. V. 23 811 2016
PubMed-ID: 27478931  |  Reference-DOI: 10.1038/NSMB.3267

(-) Compounds

Molecule 1 - FUSION GLYCOPROTEIN F0,FUSION GLYCOPROTEIN F0
    Chains: F
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Taxid: 9606
    Fragment: UNP RESIDUES 26-79 AND UNP RESIDUES 145-509 LINKED VIA LINKER RESIDUES GS
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A
    Organism Taxid: 11259
    Strain: A2
    Synonym: PROTEIN F

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : F
Biological Unit 1 (3x): F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5K6G)

(-) Sites  (0, 0)

(no "Site" information available for 5K6G)

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1F:37 -F:439
2F:69 -F:212
3F:155 -F:290
4F:313 -F:343
5F:322 -F:333
6F:358 -F:367
7F:382 -F:393
8F:416 -F:422

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Thr F:103 -Gly F:143
2Ser F:144 -Gly F:145
3Leu F:160 -Glu F:161
4Glu F:161 -Gly F:162
5Thr F:245 -Pro F:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K6G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K6G)

(-) Exons   (0, 0)

(no "Exon" information available for 5K6G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain F from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eeeeeeeeeeeeeeeeeeeeeee............hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..hhhhhhhhh....eeeee.....eeeeeeeeehhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.eeeeeee...eeeeeeeeeeeeeeeeeeeeeee..ee..........eeee...eeeeee..eeeee.hhhhheee..eeeee.hhheeehhhhhhhhh.........eee.......eeee...eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee.......eeee...hhhhhh...........eehhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k6g F  26 QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLNSALSATGSGSAIASGVAVCKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKQLLPILNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMCIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSRTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKS 509
                                    35        45        55        65        75        85        95       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504     
                                                                                                       103|                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                        143
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K6G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K6G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K6G)

(-) Gene Ontology  (12, 12)

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  Cis Peptide Bonds
    Glu F:161 - Gly F:162   [ RasMol ]  
    Leu F:160 - Glu F:161   [ RasMol ]  
    Ser F:144 - Gly F:145   [ RasMol ]  
    Thr F:103 - Gly F:143   [ RasMol ]  
    Thr F:245 - Pro F:246   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P03420: 2mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5j3d 5k6b 5k6c 5k6f 5k6h 5k6i 5toj 5tok 5tpn 5u68 5udc

(-) Related Entries Specified in the PDB File

5k6b 5k6c 5k6f 5k6h 5k6i