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(-) Description

Title :  THE NECK-LINKER AND ALPHA 7 HELIX OF HOMO SAPIENS CENP-E
 
Authors :  R. K. Phillips, I. Rayment
Date :  11 May 16  (Deposition) - 03 Aug 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Kinesin, Coiled-Coil, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. K. Phillips, L. G. Peter, S. P. Gilbert, I. Rayment
Family-Specific Kinesin Structures Reveal Neck-Linker Lengt Based On Initiation Of The Coiled-Coil.
J. Biol. Chem. V. 291 20372 2016
PubMed-ID: 27462072  |  Reference-DOI: 10.1074/JBC.M116.737577

(-) Compounds

Molecule 1 - CHIMERA PROTEIN OF CENTROMERE-ASSOCIATED PROTEIN E AND MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 1
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System Taxid469008
    FragmentUNP Q02224 RESIDUES 336-375,UNP Q15691 RESIDUES 210-257
    GeneCENPE, MAPRE1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCENTROMERE PROTEIN E,CENP-E,KINESIN-RELATED PROTEIN CENPE, APC-BINDING PROTEIN EB1,END-BINDING PROTEIN 1,EB1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (2x)A     
Biological Unit 2 (2x) B    
Biological Unit 3 (1x)  CD  
Biological Unit 4 (1x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1CD3Ligand/IonCADMIUM ION
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU B:84 , HOH B:223 , HOH B:307 , HOH B:309 , HOH B:313binding site for residue CD B 101
2AC2SOFTWAREASP B:69 , HOH F:149binding site for residue CD D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JVP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JVP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JVP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JVP)

(-) Exons   (0, 0)

(no "Exon" information available for 5JVP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:84
                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  5jvp A  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQENVLQRIVDILYATDEGFVIPD 90
                                    10        20        30       |40        50        60   ||   76        86    
                                              20-MSE            38-MSE                    64|                   
                                                                                           71                   

Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  5jvp B  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPD 90
                                    10        20        30       |40        50        60        70        80        90
                                              20-MSE            38-MSE                                                

Chain C from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  5jvp C  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPD 90
                                    10        20        30       |40        50        60        70        80        90
                                              20-MSE            38-MSE                                                

Chain D from PDB  Type:PROTEIN  Length:87
                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  5jvp D  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQENEDPVLQRIVDILYATDEGFVIPD 90
                                    10        20        30       |40        50        60    ||  73        83       
                                              20-MSE            38-MSE                     65|                     
                                                                                            69                     

Chain E from PDB  Type:PROTEIN  Length:87
                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  5jvp E  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQENEDPVLQRIVDILYATDEGFVIPD 90
                                    10        20        30       |40        50        60    ||  73        83       
                                              20-MSE            38-MSE                     65|                     
                                                                                            69                     

Chain F from PDB  Type:PROTEIN  Length:84
                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  5jvp F  1 LSNEVSTDEALLKRYRKEImDLKKQLEEVSLETRAQAmEKDQLEKERDFYFGKLRNIELICQEDPVLQRIVDILYATDEGFVIP 89
                                    10        20        30       |40        50        60  ||    75        85    
                                              20-MSE            38-MSE                   63|                    
                                                                                          69                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JVP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JVP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JVP)

(-) Gene Ontology  (56, 67)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CENPE_HUMAN | Q022241t5c
        MARE1_HUMAN | Q156911pa7 1txq 1ueg 1vka 1wu9 1yib 1yig 2hkq 2hl3 2hl5 2qjz 2r8u 3gjo 3mtu 3mud 3tq7 4xa1 4xa3 4xa6 5jv3 5jvm 5jvr 5jvs 5jvu 5jx1

(-) Related Entries Specified in the PDB File

5jv3 5jvm 5jvr 5jvs 5jvu 5jx1