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(-) Description

Title :  CRYSTAL STRUCTURE OF PHOTOINHIBITABLE RAC1 CONTAINING C450A MUTANT LOV2 DOMAIN
 
Authors :  M. Tarnawski, O. Dagliyan, P. H. Chu, D. Shirvanyants, N. V. Dokholyan, I. Schlichting
Date :  02 Feb 16  (Deposition) - 21 Dec 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Signaling Protein, Photoswitch, Chimera (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Dagliyan, M. Tarnawski, P. H. Chu, D. Shirvanyants, I. Schlichting N. V. Dokholyan, K. M. Hahn
Engineering Extrinsic Disorder To Control Protein Activity In Living Cells.
Science V. 354 1441 2016
PubMed-ID: 27980211  |  Reference-DOI: 10.1126/SCIENCE.AAH3404

(-) Compounds

Molecule 1 - RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1,NPH1-1,RAS- RELATED C3 BOTULINUM TOXIN SUBSTRATE 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RAC1, TC25, MIG5, NPH1-1
    Mutation: YES
    Organism Common: HUMAN, OAT
    Organism Scientific: HOMO SAPIENS, AVENA SATIVA
    Organism Taxid: 9606, 4498
    Synonym: CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN TC25,P21-RAC1,CELL MIGRATION-INDUCING GENE 5 PROTEIN,RAS-LIKE PROTEIN TC25,P21-RAC1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3GTP1Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
4MG1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , PRO A:34 , THR A:35 , THR A:207 , GLY A:209 , LYS A:265 , ASP A:267 , LEU A:268 , SER A:307 , ALA A:308 , LEU A:309 , MG A:403 , HOH A:502 , HOH A:504 , HOH A:509binding site for residue GTP A 401
2AC2SOFTWAREVAL A:63 , THR A:65 , ASN A:72 , ASN A:96 , ALA A:97 , ARG A:98 , LEU A:100 , GLN A:101 , VAL A:110 , ILE A:113 , ARG A:114 , ILE A:117 , LEU A:127 , ASN A:129 , ASN A:139 , PHE A:141 , PHE A:156 , GLY A:158 , GLN A:160binding site for residue FMN A 402
3AC3SOFTWARETHR A:17 , THR A:35 , ASP A:206 , GTP A:401 , HOH A:502 , HOH A:504binding site for residue MG A 403
4AC4SOFTWAREASP A:212binding site for residue CA A 404
5AC5SOFTWAREASP A:152binding site for residue CA A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HZH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HZH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HZH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HZH)

(-) Exons   (0, 0)

(no "Exon" information available for 5HZH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhh.........eeeeeeeee.............eeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhh...eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhh.hhhhhhhhhh......hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hzh A   3 AIKCVVVGDGAVGKTCLLISYTTNAFPYIPTVFDNYSANVMVDGSTTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELGSGGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 327
                                    12        22      ||34        44    ||  57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327
                                                     29|               49|                                                                                                                                                                                                                                                                                  
                                                      32                53
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HZH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HZH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HZH)

(-) Gene Ontology  (117, 118)

Asymmetric/Biological Unit(hide GO term definitions)

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  RAC1_HUMAN | P63000
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAC1_HUMAN | P63000: 1e96 1foe 1g4u 1he1 1hh4 1i4d 1i4l 1i4t 1mh1 1ryf 1ryh 2fju 2h7v 2nz8 2p2l 2rmk 2vrw 2wkp 2wkq 2wkr 2yin 3b13 3bji 3ryt 3sbd 3sbe 3su8 3sua 3th5 4gzl 4gzm 4yon 5fi0 5o33
UniProtKB/TrEMBL
        O49003_AVESA | O49003: 2v0u 2v0w 2v1a 2v1b 2wkp 2wkq 2wkr 4wf0 5efw 5hzi 5hzj 5hzk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HZH)