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(-) Description

Title :  CRYSTAL STRUCTURE OF ILID - AN IMPROVED LIGHT-INDUCIBLE DIMER
 
Authors :  R. Hallett, T. Williams, B. Kuhlman
Date :  11 Sep 14  (Deposition) - 24 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Light-Inducible Dimer, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Guntas, R. A. Hallett, S. P. Zimmerman, T. Williams, H. Yumerefendi J. E. Bear, B. Kuhlman
Engineering An Improved Light-Induced Dimer (Ilid) For Controlling The Localization And Activity Of Signaling Proteins.
Proc. Natl. Acad. Sci. Usa V. 112 112 2015
PubMed-ID: 25535392  |  Reference-DOI: 10.1073/PNAS.1417910112
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NPH1-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE-80L
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 405-543
    Gene: NPH1-1
    Organism Common: OAT
    Organism Scientific: AVENA SATIVA
    Organism Taxid: 4498

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:416 , THR A:418 , ASN A:425 , ASN A:449 , CYS A:450 , ARG A:451 , LEU A:453 , GLN A:454 , VAL A:463 , ARG A:467 , ILE A:470 , LEU A:480 , ASN A:482 , ASN A:492 , PHE A:494 , PHE A:509 , GLY A:511 , GLN A:513 , HOH A:763 , HOH A:765 , HOH A:772 , HOH A:773binding site for residue FMN A 601
2AC2SOFTWAREVAL B:416 , THR B:418 , ASN B:425 , ASN B:449 , CYS B:450 , ARG B:451 , LEU B:453 , GLN B:454 , VAL B:463 , ARG B:467 , ILE B:470 , LEU B:480 , ASN B:482 , ASN B:492 , PHE B:494 , PHE B:509 , GLY B:511 , GLN B:513 , HOH B:764 , HOH B:773 , HOH B:777 , HOH B:806binding site for residue FMN B 601
3AC3SOFTWAREARG B:442 , LYS B:533 , HOH B:710binding site for residue CL B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WF0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WF0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WF0)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4WF0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh..eeeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wf0 A 406 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDYKGDVQYFIGVQLDGTERLHGAAEREAVCLIKKTAFQIAEAANDENYF 549
                                   415       425       435       445       455       465       475       485       495       505       515       525       535       545    


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh..eeeee........eeeehhhhhhhhh.hhhhhh..hhhhhh....hhhhhhhhhhhhhhh..eeeeeeee.....eeeeeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wf0 B 406 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKKFWNVFHLQPMRDYKGDVQYFIGVQLDGTERLHGAAEREAVCLIKKTAFQIAEAANDENYF 549
                                   415       425       435       445       455       465       475       485       495       505       515       525       535       545
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WF0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WF0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WF0)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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        O49003_AVESA | O49003: 2v0u 2v0w 2v1a 2v1b 2wkp 2wkq 2wkr 5efw 5hzh 5hzi 5hzj 5hzk

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