4GZL - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RAC1 Q61L MUTANT

Authors :   B. H. Ha, T. J. Boggon

Date :   06 Sep 12 (Deposition) - 12 Dec 12 (Release) - 30 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Rossmann Fold, Gtp Binding, Membrane, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. J. Davis, B. H. Ha, E. C. Holman, R. Halaban, J. Schlessinger, T. J. Boggon
Rac1P29S Is A Spontaneously Activating Cancer-Associated Gtpase.
Proc. Natl. Acad. Sci. Usa V. 110 912 2013
PubMed-ID: 23284172 | Reference-DOI: 10.1073/PNAS.1220895110

Molecule 1 - RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1
	Chains	:	A, B
	EC Number	:	3.6.5.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	MODIFIED PET28
	Expression System Strain	:	BL21(DE3)RILP
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 2-177
	Gene	:	RAC1, TC25, MIG5
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	RAC1, CELL MIGRATION-INDUCING GENE 5 PROTEIN, RAS-LIKE PROTEIN TC25, P21-RAC1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	GNP	2	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	IPA	1	Ligand/Ion	ISOPROPYL ALCOHOL
3	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	IPA	1	Ligand/Ion	ISOPROPYL ALCOHOL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GNP	1	Ligand/Ion	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2	IPA	-1	Ligand/Ion	ISOPROPYL ALCOHOL
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:12 , ALA A:13 , VAL A:14 , GLY A:15 , LYS A:16 , THR A:17 , CYS A:18 , PHE A:28 , TYR A:32 , PRO A:34 , THR A:35 , GLY A:60 , LYS A:116 , ASP A:118 , LEU A:119 , SER A:158 , ALA A:159 , LEU A:160 , MG A:202 , HOH A:309 , HOH A:311 , HOH A:315 , HOH A:316 , HOH A:317 , HOH A:363	BINDING SITE FOR RESIDUE GNP A 201
2	AC2	SOFTWARE	THR A:17 , THR A:35 , GNP A:201 , HOH A:309 , HOH A:316	BINDING SITE FOR RESIDUE MG A 202
3	AC3	SOFTWARE	ASP A:118 , THR A:161 , ARG A:163	BINDING SITE FOR RESIDUE IPA A 203
4	AC4	SOFTWARE	GLY B:12 , ALA B:13 , VAL B:14 , GLY B:15 , LYS B:16 , THR B:17 , CYS B:18 , PHE B:28 , TYR B:32 , PRO B:34 , THR B:35 , GLY B:60 , LYS B:116 , ASP B:118 , LEU B:119 , SER B:158 , ALA B:159 , LEU B:160 , MG B:1001 , HOH B:1105 , HOH B:1123 , HOH B:1124 , HOH B:1125 , HOH B:1128 , HOH B:1169	BINDING SITE FOR RESIDUE GNP B 1000
5	AC5	SOFTWARE	THR B:17 , THR B:35 , GNP B:1000 , HOH B:1105 , HOH B:1125	BINDING SITE FOR RESIDUE MG B 1001

(no "SS Bond" information available for 4GZL)

Asymmetric Unit

No.	Residues
1	Pro A:29	-	Gly A:30

(no "SAP(SNP)/Variant" information available for 4GZL)

(no "PROSITE Motif" information available for 4GZL)

(no "Exon" information available for 4GZL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains d4gzla_ A: automated matches                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhh.........eeeeeeeee...eeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...eeee.......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gzl A   3 AIKCVVVGDGAVGKTCLLISYTTNAFPGYIPTVFDNYSANVMVDKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
                                    12        22       |33        43   ||   54        64        74        84        94       104       114       124       134       144       154       164       174   
                                                      30|             47|                                                                                                                                
                                                       32              49

Chain B from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains d4gzlb_ B: automated matches                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhh.........eeeeeeeeee..eeeeeeeeee..hhhhh.hhhhhh....eeeeeee..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhh...eeee.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4gzl B   2 QAIKCVVVGDGAVGKTCLLISYTTNAFPEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
                                    11        21       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172    
                                                      29|                                                                                                                                                 
                                                       31

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: G proteins (693)

Protein domain: automated matches (173)

Human (Homo sapiens) [TaxId: 9606] (112)

1a	d4gzla_	A:
1b	d4gzlb_	B:

(no "CATH Domain" information available for 4GZL)

(no "Pfam Domain" information available for 4GZL)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Pro A:29 - Gly A:30	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	4gzl
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	3.6.5.2
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3sbd	RAC1 P29S MUTANT
3sbe	RAC1 P29S MUTANT
3th5	RAC1 WILD-TYPE
4gzm

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (109, 109)

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