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(-) Description

Title :  STRUCTURAL BASIS OF BACKWARDS MOTION IN KINESIN-14: MINUS-END DIRECTED NKN664 IN THE ADP STATE
 
Authors :  R. Nitta
Date :  14 Jan 16  (Deposition) - 25 Jan 17  (Release) - 25 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinesin, Kinesin-14, Microtubule, Atpase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Yamagishi, H. Shigematsu, T. Yokoyama, M. Kikkawa, M. Sugawa, M. Aoki, M. Shirouzu, J. Yajima, R. Nitta
Backwards Motion In Kinesin-14 Requires Neck-Mimic To Control A Neck-Helix Swing.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN CLARET SEGREGATIONAL,MINUS-END KINESIN-1/KINESIN- 14,PROTEIN CLARET SEGREGATIONAL
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: FRUIT FLY, RAT
    Organism Scientific: DROSOPHILA MELANOGASTER, RATTUS NORVEGICUS
    Organism Taxid: 7227, 10116

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:32 , PRO A:33 , GLN A:102 , SER A:104 , SER A:105 , GLY A:106 , LYS A:107 , THR A:108 , HIS A:109 , LYS A:114 , MG A:402binding site for residue ADP A 401
2AC2SOFTWARETHR A:108 , ADP A:401binding site for residue MG A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLE)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:23 -Asn A:24
2Asp A:139 -Glu A:140
3Ile A:270 -Asn A:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLE)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeee...hhhhhhh............ee......ee..eee....hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee..........eee.....eee.....eee.hhhhhhhhhhhhhhhh....hhhhheeeeeeeeeeee.....eeeeeeeeee...........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hle A  16 NTVMDLRGNIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVIQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEFAIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKSNRHVAEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKVKNINKSLSALGNVISALAEGTTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFAA 336
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205   ||  220       230       240       250   ||  273       283       293       303       313       323       333   
                                                                                                                                                                                                                           209|                                    254|                                                                    
                                                                                                                                                                                                                            215                                     268
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLE)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:139 - Glu A:140   [ RasMol ]  
    Gly A:23 - Asn A:24   [ RasMol ]  
    Ile A:270 - Asn A:271   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCD_DROME | P20480: 1cz7 1n6m 1ozx 1syj 1syp 1sz4 1sz5 2ncd 3l1c 3u06 5hnw 5hnx 5hny 5hnz

(-) Related Entries Specified in the PDB File

5hnw 5hnx 5hny 5hnz