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(-) Description

Title :  CRYSTAL STRUCTURE OF THE AMPA RECEPTOR GLUA2/A4 N-TERMINAL DOMAIN HETERODIMER
 
Authors :  J. Garcia-Nafria, B. Herguedas, I. H. Greger
Date :  21 Feb 16  (Deposition) - 16 Mar 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Herguedas, J. Garcia-Nafria, O. Cais, R. Fernandez-Leiro, J. Krieger, H. Ho, I. H. Greger
Structure And Organization Of Heteromeric Ampa-Type Glutamate Receptors.
Science V. 352 3873 2016
PubMed-ID: 26966189  |  Reference-DOI: 10.1126/SCIENCE.AAD3873

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 2
    Chains: A, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293 GNT1
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 25-400
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUR-2, AMPA-SELECTIVE GLUTAMATE RECEPTOR 2, GLUR-B, GLUR-K 2, GLUTAMATE RECEPTOR IONOTROPIC, AMPA 2, GLUA2, GLUA2 AMPA RECEPTOR N-TERMINAL DOMAIN
 
Molecule 2 - GLUTAMATE RECEPTOR 4
    Chains: B, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293 GNT1
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 22-401
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUR-4, GLUR4, AMPA-SELECTIVE GLUTAMATE RECEPTOR 4, GLUR-D, GLUTAMATE RECEPTOR IONOTROPIC, AMPA 4, GLUA4, GLUA4 AMPA RECEPTOR N-TERMINAL DOMAIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER B:33 , ASN B:35 , LYS B:253BINDING SITE FOR RESIDUE SO4 B1379
2AC2SOFTWARESER D:33BINDING SITE FOR RESIDUE SO4 D1380
3AC3SOFTWAREARG B:292 , LYS C:262BINDING SITE FOR RESIDUE SO4 C1400
4AC4SOFTWARETHR A:97 , ASP A:98 , GLY A:99 , HIS A:101 , ARG B:80BINDING SITE FOR RESIDUE SO4 A1378
5AC5SOFTWAREARG D:332 , ASN D:339 , GLN D:341 , ASN D:350BINDING SITE FOR RESIDUE NAG D1381
6AC6SOFTWAREGLN A:331 , LYS A:340 , ASN A:349 , THR D:271BINDING SITE FOR MONO-SACCHARIDE NAG A1379 BOUND TO ASN A 349
7AC7SOFTWAREGLN B:341 , ASN B:350 , MET B:372 , ASP C:225BINDING SITE FOR MONO-SACCHARIDE NAG B1380 BOUND TO ASN B 350

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:57 -A:309
2B:63 -B:310
3C:57 -C:309
4D:63 -D:310

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ile A:229 -Gln A:230
2Asn A:312 -Pro A:313
3Gly B:105 -Glu B:106
4Arg B:304 -Gly B:305
5Asn B:313 -Pro B:314
6Leu C:227 -Lys C:228
7Gly C:304 -Asn C:305
8Asn C:312 -Pro C:313
9Asn D:313 -Pro D:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FWX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FWX)

(-) Exons   (0, 0)

(no "Exon" information available for 5FWX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:351
                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeee..................eeeeee.....hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhh.eeee..eeee..........eeeeeee....eeeeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwx A   5 SIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNSLFQDLELKKERRVILDCERDKVNDIVDQVIGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT 377
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154      |175       185       195       212       222       232       242       252       262       272       282       292       302|      316       326       336       346       356       366       376 
                                                                                                                                                                                      161|                           203|                                                                                        302|                                                                      
                                                                                                                                                                                       173                            211                                                                                         307                                                                      


Chain B from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh......eeee....hhhh.hhhhhhhh.eeeeee.....hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhh..eeee..eeee..........eeeeeeee..eeeeeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwx B   2 FPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNAAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378
                                    11        21        31    ||  43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373     
                                                             36|                                                                                                                                                                                                                                                                                                                                                   
                                                              39                                                                                                                                                                                                                                                                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:356
                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee.....hhhhhhhhh..eeeee.hhhhhhhhhhhhh..eeee..................eeeeee.....hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhh.eee..eee...........eeeeeee....eeeeeeee...eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwx C   5 SIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNRSLFQDLELKKERRVILDCERDKVNDIVDQVIGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVT 377
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154      |174       184       194       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371      
                                                                                                                                                                                      161|                            203|                                                                                                                                                                      
                                                                                                                                                                                       172                             211                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhhhh.......eeeeeeee....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhh.eeee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhhh......eeee....hhhh.hhhhhhhh.eeeeee.....hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhh..eeee..eeee..........eeeeeeee..eeeeeeeee...eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwx D   2 FPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQ 379
                                    11        21        31     || 42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 ||    314       324       334       344       354       364       374     
                                                              37|                                                                                                                                                                                                                                                                      304|                                                                        
                                                               39                                                                                                                                                                                                                                                                       307
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FWX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FWX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FWX)

(-) Gene Ontology  (54, 78)

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  5fwx
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  GRIA2_RAT | P19491
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  GRIA4_RAT | P19493
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRIA2_RAT | P19491: 1ftj 1ftk 1ftl 1ftm 1fto 1fw0 1gr2 1lb8 1lb9 1lbb 1lbc 1m5b 1m5c 1m5d 1m5e 1m5f 1mm6 1mm7 1mqd 1mqg 1mqh 1mqi 1mqj 1ms7 1mxu 1mxv 1mxw 1mxx 1mxy 1mxz 1my0 1my1 1my2 1my3 1my4 1n0t 1nnk 1nnp 1p1n 1p1o 1p1q 1p1u 1p1w 1syh 1syi 1wvj 1xhy 2aix 2al4 2al5 2anj 2cmo 2gfe 2i3v 2i3w 2p2a 2uxa 2xx7 2xx8 2xx9 2xxh 2xxi 3b6q 3b6t 3b6w 3b7d 3bbr 3bft 3bfu 3bki 3dp6 3h03 3h06 3h5v 3h5w 3h6t 3h6u 3h6v 3h6w 3hsy 3ijo 3ijx 3ik6 3il1 3ilt 3ilu 3kg2 3kgc 3lsf 3lsl 3m3l 3n6v 3o28 3o29 3o2a 3o2j 3o6g 3o6h 3o6i 3pd8 3pd9 3pmv 3pmw 3pmx 3rtf 3rtw 3t93 3t96 3t9h 3t9u 3t9v 3t9x 3tdj 3tkd 3tza 4fat 4g8m 4gxs 4h8j 4igt 4isu 4iy5 4iy6 4l17 4lz5 4lz7 4lz8 4n07 4o3a 4o3b 4o3c 4q30 4u1o 4u1w 4u1x 4u1y 4u1z 4u21 4u22 4u23 4u2p 4u2q 4u2r 4u4f 4u4g 4u4s 4u4x 4u5b 4u5c 4u5d 4u5e 4u5f 4uq6 4uqj 4uqk 4x48 4yma 4yu0 4z0i 5buu 5cbr 5cbs 5elv 5fhm 5fhn 5fho 5fth 5fti 5fwy 5ide 5idf 5jei 5kbs 5kbt 5kbu 5kbv 5kk2 5l1b 5l1e 5l1f 5l1g 5l1h 5vhw 5vhx 5vhy 5vhz 5vot 5vou 5vov
        GRIA4_RAT | P19493: 3en3 3epe 3fas 3fat 3kei 3kfm 4gpa

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FWX)