Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN IN COMPLEX WITH L-ASPARTATE AT 1.80 A RESOLUTION
 
Authors :  C. Krintel, F. Frydenvang, M. Gajhede, J. S. Kastrup
Date :  18 Dec 13  (Deposition) - 16 Apr 14  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ampa Receptor Ligand-Binding Domain, Membrane Protein-Agonist Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Krintel, K. Frydenvang, A. Ceravalls De Rabassa, A. M. Kaern, M. Gajhede, D. S. Pickering, J. S. Kastrup
L-Asp Is A Useful Tool In The Purification Of The Ionotropi Glutamate Receptor A2 Ligand-Binding Domain.
Febs J. V. 281 2422 2014
PubMed-ID: 24673938  |  Reference-DOI: 10.1111/FEBS.12795
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 2
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B(+)
    Expression System Strain: ORIGAMI B (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: LIGAND BINDING DOMAIN (UNP RESIDUES 413-527 AND UNP RESIDUES 653-736)
    Gene: GRIA2, GLUR2
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 39)

Asymmetric Unit (6, 39)
No.NameCountTypeFull Name
1ACT10Ligand/IonACETATE ION
2ASP3Mod. Amino AcidASPARTIC ACID
3CL1Ligand/IonCHLORIDE ION
4GOL12Ligand/IonGLYCEROL
5PEG4Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN9Ligand/IonZINC ION
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2ASP2Mod. Amino AcidASPARTIC ACID
3CL-1Ligand/IonCHLORIDE ION
4GOL12Ligand/IonGLYCEROL
5PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 9)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ASP1Mod. Amino AcidASPARTIC ACID
3CL-1Ligand/IonCHLORIDE ION
4GOL4Ligand/IonGLYCEROL
5PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION
Biological Unit 3 (4, 10)
No.NameCountTypeFull Name
1ACT6Ligand/IonACETATE ION
2ASP1Mod. Amino AcidASPARTIC ACID
3CL-1Ligand/IonCHLORIDE ION
4GOL2Ligand/IonGLYCEROL
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
6ZN-1Ligand/IonZINC ION

(-) Sites  (39, 39)

Asymmetric Unit (39, 39)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:29 , LYS A:50 , TYR A:51 , HOH A:432 , HOH A:495BINDING SITE FOR RESIDUE GOL A 301
02AC2SOFTWARETYR A:61 , PRO A:89 , LEU A:90 , THR A:91 , ARG A:96 , GLY A:141 , SER A:142 , THR A:143 , GLU A:193 , HOH A:410 , HOH A:478BINDING SITE FOR RESIDUE ASP A 302
03AC3SOFTWAREHIS A:23 , GLU A:30 , ACT A:308 , HIS C:23BINDING SITE FOR RESIDUE ZN A 303
04AC4SOFTWAREGLU A:42 , HIS A:46 , LEU A:241 , HOH A:635 , GLU B:166BINDING SITE FOR RESIDUE ZN A 304
05AC5SOFTWAREASP A:156BINDING SITE FOR RESIDUE ZN A 305
06AC6SOFTWAREPHE A:106 , SER A:108 , SER A:217 , ASN A:242 , HOH A:621BINDING SITE FOR RESIDUE ACT A 306
07AC7SOFTWAREARG A:180 , SER A:184 , LYS A:187 , TYR A:188BINDING SITE FOR RESIDUE ACT A 307
08AC8SOFTWARELYS A:20 , HIS A:23 , GLU A:30 , ZN A:303 , HIS C:23 , GLU C:24BINDING SITE FOR RESIDUE ACT A 308
09AC9SOFTWARELYS A:116 , LYS A:185 , HOH A:632BINDING SITE FOR RESIDUE GOL A 309
10BC1SOFTWAREASN A:214 , ASP A:216 , SER A:217 , ASP A:248BINDING SITE FOR RESIDUE GOL A 310
11BC2SOFTWAREARG A:64 , TRP A:71 , VAL A:99 , GLY A:118 , PRO A:120 , HOH A:449 , HOH A:465BINDING SITE FOR RESIDUE GOL A 311
12BC3SOFTWAREGLU A:201 , LYS A:210BINDING SITE FOR RESIDUE GOL A 312
13BC4SOFTWARELYS A:144 , ARG A:148 , PHE A:170 , HOH A:634BINDING SITE FOR RESIDUE GOL A 313
14BC5SOFTWARETYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , LEU B:138 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , MET B:196 , HOH B:416 , HOH B:575 , HOH B:583BINDING SITE FOR RESIDUE ASP B 301
15BC6SOFTWAREHIS B:23 , ASP C:65 , ASP C:67 , ACT C:309 , HOH C:559BINDING SITE FOR RESIDUE ZN B 302
16BC7SOFTWAREGLU A:166 , GLU B:42 , HIS B:46 , HOH B:573BINDING SITE FOR RESIDUE ZN B 303
17BC8SOFTWAREARG B:180 , SER B:184 , LYS B:187BINDING SITE FOR RESIDUE ACT B 304
18BC9SOFTWARELYS B:69 , TYR B:80 , GLY B:118 , LYS B:185 , HOH B:460 , HOH B:555BINDING SITE FOR RESIDUE GOL B 305
19CC1SOFTWAREILE B:70 , TYR B:80 , LYS B:116 , LYS B:185 , HOH B:460BINDING SITE FOR RESIDUE GOL B 306
20CC2SOFTWAREGLU B:201 , LYS B:210BINDING SITE FOR RESIDUE GOL B 307
21CC3SOFTWAREASP B:248 , ASP C:216 , SER C:217BINDING SITE FOR RESIDUE GOL B 308
22CC4SOFTWAREHIS B:46 , LEU B:236 , LYS B:240 , HOH B:445 , GLU C:98BINDING SITE FOR RESIDUE PEG B 309
23CC5SOFTWAREARG B:64 , TRP B:71 , GLY B:118 , HOH B:496 , HOH B:520 , HOH B:593BINDING SITE FOR RESIDUE PEG B 310
24CC6SOFTWAREASN B:232 , LEU B:236 , HOH B:444 , GLU C:97 , GLU C:98 , LYS C:226BINDING SITE FOR RESIDUE PEG B 311
25CC7SOFTWARELYS B:4 , GLY B:262 , SER B:263BINDING SITE FOR RESIDUE CL B 312
26CC8SOFTWARETYR C:61 , PRO C:89 , LEU C:90 , THR C:91 , ARG C:96 , GLY C:141 , SER C:142 , THR C:143 , GLU C:193 , HOH C:403 , HOH C:444BINDING SITE FOR RESIDUE ASP C 301
27CC9SOFTWAREGLU C:42 , LYS C:45 , HIS C:46BINDING SITE FOR RESIDUE ZN C 302
28DC1SOFTWAREGLU B:24 , ASP C:139 , SER C:140 , ACT C:307 , HOH C:553BINDING SITE FOR RESIDUE ZN C 303
29DC2SOFTWAREHIS C:46 , LYS C:240 , HOH C:480 , HOH C:552BINDING SITE FOR RESIDUE ZN C 304
30DC3SOFTWAREASP C:156 , HOH C:560BINDING SITE FOR RESIDUE ZN C 305
31DC4SOFTWARESER B:217 , HOH B:465 , HOH B:579 , PRO C:105 , SER C:108BINDING SITE FOR RESIDUE ACT C 306
32DC5SOFTWAREGLU B:24 , ALA C:63 , ARG C:64 , ASN C:72 , ASP C:139 , SER C:140 , ZN C:303 , HOH C:528BINDING SITE FOR RESIDUE ACT C 307
33DC6SOFTWAREASN B:214 , ASP B:216 , SER B:217 , ASP C:248 , HOH C:557BINDING SITE FOR RESIDUE ACT C 308
34DC7SOFTWAREMET B:19 , HIS B:23 , ZN B:302 , ASP C:65 , ASP C:67BINDING SITE FOR RESIDUE ACT C 309
35DC8SOFTWAREARG C:180 , LYS C:187 , TYR C:188BINDING SITE FOR RESIDUE ACT C 310
36DC9SOFTWARELYS B:151 , LYS C:20 , GLU C:30BINDING SITE FOR RESIDUE ACT C 311
37EC1SOFTWAREPRO B:105 , SER B:108 , ASN B:242 , HOH B:406 , SER C:217 , HOH C:514BINDING SITE FOR RESIDUE GOL C 312
38EC2SOFTWAREGLU B:27 , ASP C:139 , SER C:168 , PHE C:170 , VAL C:171 , ARG C:172 , HOH C:476 , HOH C:511 , HOH C:576BINDING SITE FOR RESIDUE GOL C 313
39EC3SOFTWAREARG C:64 , TRP C:71 , VAL C:99 , GLY C:118 , HOH C:472 , HOH C:495 , HOH C:506BINDING SITE FOR RESIDUE PEG C 314

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:206 -A:261
2B:206 -B:261
3C:206 -C:261

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ser A:14 -Pro A:15
2Glu A:166 -Pro A:167
3Lys A:204 -Pro A:205
4Ser B:14 -Pro B:15
5Glu B:166 -Pro B:167
6Lys B:204 -Pro B:205
7Ser C:14 -Pro C:15
8Glu C:166 -Pro C:167
9Lys C:204 -Pro C:205

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O3A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O3A)

(-) Exons   (0, 0)

(no "Exon" information available for 4O3A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.......ee........hhh.eehhhhhhhhhhhhhhh..eeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee......hhhhhhh....eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o3a A   1 GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 


Chain B from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee......hhhhhhh....eee....hhhhhhhhh..hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4o3a B   1 GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSD 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  ||
                                                                                                                                                                                                                                                                                                263|
                                                                                                                                                                                                                                                                                                 301


Chain C from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee......hhhhhhh....eeee...hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o3a C   1 GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGD 301
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 ||
                                                                                                                                                                                                                                                                                               262|
                                                                                                                                                                                                                                                                                                301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O3A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O3A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O3A)

(-) Gene Ontology  (49, 49)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    ACT  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ASP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PEG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:166 - Pro A:167   [ RasMol ]  
    Glu B:166 - Pro B:167   [ RasMol ]  
    Glu C:166 - Pro C:167   [ RasMol ]  
    Lys A:204 - Pro A:205   [ RasMol ]  
    Lys B:204 - Pro B:205   [ RasMol ]  
    Lys C:204 - Pro C:205   [ RasMol ]  
    Ser A:14 - Pro A:15   [ RasMol ]  
    Ser B:14 - Pro B:15   [ RasMol ]  
    Ser C:14 - Pro C:15   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4o3a
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GRIA2_RAT | P19491
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GRIA2_RAT | P19491
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRIA2_RAT | P19491: 1ftj 1ftk 1ftl 1ftm 1fto 1fw0 1gr2 1lb8 1lb9 1lbb 1lbc 1m5b 1m5c 1m5d 1m5e 1m5f 1mm6 1mm7 1mqd 1mqg 1mqh 1mqi 1mqj 1ms7 1mxu 1mxv 1mxw 1mxx 1mxy 1mxz 1my0 1my1 1my2 1my3 1my4 1n0t 1nnk 1nnp 1p1n 1p1o 1p1q 1p1u 1p1w 1syh 1syi 1wvj 1xhy 2aix 2al4 2al5 2anj 2cmo 2gfe 2i3v 2i3w 2p2a 2uxa 2xx7 2xx8 2xx9 2xxh 2xxi 3b6q 3b6t 3b6w 3b7d 3bbr 3bft 3bfu 3bki 3dp6 3h03 3h06 3h5v 3h5w 3h6t 3h6u 3h6v 3h6w 3hsy 3ijo 3ijx 3ik6 3il1 3ilt 3ilu 3kg2 3kgc 3lsf 3lsl 3m3l 3n6v 3o28 3o29 3o2a 3o2j 3o6g 3o6h 3o6i 3pd8 3pd9 3pmv 3pmw 3pmx 3rtf 3rtw 3t93 3t96 3t9h 3t9u 3t9v 3t9x 3tdj 3tkd 3tza 4fat 4g8m 4gxs 4h8j 4igt 4isu 4iy5 4iy6 4l17 4lz5 4lz7 4lz8 4n07 4o3b 4o3c 4q30 4u1o 4u1w 4u1x 4u1y 4u1z 4u21 4u22 4u23 4u2p 4u2q 4u2r 4u4f 4u4g 4u4s 4u4x 4u5b 4u5c 4u5d 4u5e 4u5f 4uq6 4uqj 4uqk 4x48 4yma 4yu0 4z0i 5buu 5cbr 5cbs 5elv 5fhm 5fhn 5fho 5fth 5fti 5fwx 5fwy 5ide 5idf 5jei 5kbs 5kbt 5kbu 5kbv 5kk2 5l1b 5l1e 5l1f 5l1g 5l1h 5vhw 5vhx 5vhy 5vhz 5vot 5vou 5vov

(-) Related Entries Specified in the PDB File

1ftj GLUA2 S1S2J IN COMPLEX WITH THE FULL AGONIST GLUTAMATE
1fto GLUA2 LIGAND BINDING CORE (S1S2J) IN THE APO STATE
4o3b
4o3c