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(-) Description

Title :  X-RAY STRUCTURE OF IGLUR4 FLIP LIGAND-BINDING CORE (S1S2) IN COMPLEX WITH (S)-AMPA AT 1.90A RESOLUTION
 
Authors :  C. Kasper, K. Frydenvang, P. Naur, M. Gajhede, J. S. Kastrup
Date :  18 Nov 08  (Deposition) - 09 Dec 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Ionotropic Glutamate Receptors, Iglur4, Flip, Ligand-Binding Core, Agonist Complex, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Kasper, K. Frydenvang, P. Naur, M. Gajhede, D. S. Pickering, J. S. Kastrup
Molecular Mechanism Of Agonist Recognition By The Ligand-Binding Core Of The Ionotropic Glutamate Receptor 4
Febs Lett. V. 582 4089 2008
PubMed-ID: 19022251  |  Reference-DOI: 10.1016/J.FEBSLET.2008.11.005

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 4
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-32A(+)
    Expression System Strain: ORIGAMI 2
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: IGLUR4 FLIP LIGAND-BINDING CORE (S1S2)
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: IONOTROPIC GLUTAMATE RECEPTOR 4, GLUR-4, GLUR4, GLUR-D, GLUTAMATE RECEPTOR IONOTROPIC, AMPA 4, AMPA-SELECTIVE GLUTAMATE RECEPTOR 4

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric Unit (4, 25)
No.NameCountTypeFull Name
1ACY6Ligand/IonACETIC ACID
2AMQ3Ligand/Ion(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONICACID
3GOL9Ligand/IonGLYCEROL
4SO47Ligand/IonSULFATE ION
Biological Unit 1 (4, 16)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2AMQ2Ligand/Ion(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONICACID
3GOL5Ligand/IonGLYCEROL
4SO45Ligand/IonSULFATE ION
Biological Unit 2 (4, 18)
No.NameCountTypeFull Name
1ACY4Ligand/IonACETIC ACID
2AMQ2Ligand/Ion(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONICACID
3GOL8Ligand/IonGLYCEROL
4SO44Ligand/IonSULFATE ION

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:59 , PRO A:87 , LEU A:88 , THR A:89 , ARG A:94 , LEU A:136 , GLY A:139 , SER A:140 , THR A:141 , GLU A:191 , MET A:194 , TYR A:218 , HOH A:310 , HOH A:312BINDING SITE FOR RESIDUE AMQ A 427
02AC2SOFTWARETYR B:59 , PRO B:87 , THR B:89 , ARG B:94 , GLY B:139 , SER B:140 , THR B:141 , LEU B:190 , GLU B:191 , MET B:194 , HOH B:288 , HOH B:296BINDING SITE FOR RESIDUE AMQ B 428
03AC3SOFTWARETYR C:59 , PRO C:87 , THR C:89 , ARG C:94 , LEU C:136 , GLY C:139 , SER C:140 , THR C:141 , LEU C:190 , GLU C:191 , MET C:194 , TYR C:218 , HOH C:300 , HOH C:311BINDING SITE FOR RESIDUE AMQ C 429
04AC4SOFTWAREASP A:137 , SER A:138 , LYS A:142 , ARG A:146 , HOH A:315 , HOH A:334 , HOH A:368 , HOH A:387 , HOH A:1131BINDING SITE FOR RESIDUE SO4 A 261
05AC5SOFTWAREARG A:146 , TRP A:157 , ARG A:161 , HOH A:1138BINDING SITE FOR RESIDUE SO4 A 262
06AC6SOFTWAREHIS A:44 , LYS A:238 , ILE C:68BINDING SITE FOR RESIDUE SO4 A 263
07AC7SOFTWAREARG A:2 , HOH A:1137 , ARG B:2 , ARG C:2BINDING SITE FOR RESIDUE SO4 A 264
08AC8SOFTWAREARG B:62 , LYS B:67 , ARG C:62 , LYS C:67BINDING SITE FOR RESIDUE SO4 C 261
09AC9SOFTWAREGLY A:225 , SER A:226 , SER A:227 , ARG B:2BINDING SITE FOR RESIDUE SO4 B 261
10BC1SOFTWAREHOH B:374 , HOH B:474 , HOH B:486 , HIS C:44 , LYS C:238BINDING SITE FOR RESIDUE SO4 C 262
11BC2SOFTWAREASP C:214 , SER C:215 , SER C:240 , GLU C:241 , HOH C:270 , HOH C:310 , HOH C:368 , HOH C:371 , HOH C:374BINDING SITE FOR RESIDUE GOL C 263
12BC3SOFTWAREPRO C:103 , PHE C:104 , MET C:105 , SER C:106 , SER C:215 , LYS C:216 , SER C:240 , ACY C:267 , HOH C:348 , HOH C:378BINDING SITE FOR RESIDUE GOL C 264
13BC4SOFTWAREPRO A:103 , MET A:105 , SER A:106 , SER A:240 , HOH A:538 , SER B:215 , LYS B:216 , HOH B:326 , HOH B:367 , HOH B:624BINDING SITE FOR RESIDUE GOL B 262
14BC5SOFTWARESER A:215 , LYS A:216 , PRO B:103 , PHE B:104 , SER B:106 , SER B:240 , LEU B:245 , ACY B:267 , HOH B:300 , HOH B:331 , HOH B:362 , HOH B:387 , HOH B:476BINDING SITE FOR RESIDUE GOL B 263
15BC6SOFTWARESER A:226 , SER A:227 , ARG A:229 , THR A:230 , HOH A:410 , GLY C:225BINDING SITE FOR RESIDUE GOL A 265
16BC7SOFTWARESER A:240 , GLU A:241 , HOH A:555 , HOH A:822 , ASP B:214 , SER B:215 , LYS B:216 , HOH B:382 , HOH B:390 , HOH B:416BINDING SITE FOR RESIDUE GOL B 264
17BC8SOFTWARESER C:226 , SER C:227 , ARG C:229 , THR C:230 , PRO C:231 , HOH C:390 , HOH C:625BINDING SITE FOR RESIDUE GOL C 265
18BC9SOFTWAREASN C:27 , LYS C:48 , TYR C:49BINDING SITE FOR RESIDUE GOL C 266
19CC1SOFTWAREGLY B:116 , THR B:117 , ILE B:119 , GLU B:120 , MET B:207BINDING SITE FOR RESIDUE GOL B 265
20CC2SOFTWARESER A:106 , HOH A:604 , SER B:215BINDING SITE FOR RESIDUE ACY A 266
21CC3SOFTWAREALA B:132 , TYR B:159 , GLU B:164 , PRO B:165 , VAL B:167 , ARG B:178BINDING SITE FOR RESIDUE ACY B 266
22CC4SOFTWARESER A:215 , MET B:105 , SER B:106 , GOL B:263 , HOH B:1085 , HOH B:1139BINDING SITE FOR RESIDUE ACY B 267
23CC5SOFTWARESER C:106 , SER C:215 , GOL C:264 , HOH C:371BINDING SITE FOR RESIDUE ACY C 267
24CC6SOFTWAREHIS B:21 , GLU B:22 , LYS B:29 , HOH B:1063BINDING SITE FOR RESIDUE ACY B 268
25CC7SOFTWAREARG B:146 , ARG C:146BINDING SITE FOR RESIDUE ACY C 268

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:204 -A:259
2B:204 -B:259
3C:204 -C:259

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Ser A:12 -Pro A:13
2Glu A:164 -Pro A:165
3Lys A:202 -Pro A:203
4Ser B:12 -Pro B:13
5Glu B:164 -Pro B:165
6Lys B:202 -Pro B:203
7Ser C:12 -Pro C:13
8Glu C:164 -Pro C:165
9Lys C:202 -Pro C:203

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FAT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FAT)

(-) Exons   (0, 0)

(no "Exon" information available for 3FAT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
 aligned with GRIA4_RAT | P19493 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:382
                                   423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793  
            GRIA4_RAT   414 NRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 795
               SCOP domains d3fata_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -3fatA01 A:2-107,A:217-256 Periplasmic binding protein-like II                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3fatA01 A:2-107,A:217-256               --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh.eeeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee..---------------------------------------------------------------------------------------------------------------------------....hhhhhhh....eeee...hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee....hhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fat A   1 GRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKG---------------------------------------------------------------------------------------------------------------------------TPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGEC 259
                                    10        20        30        40        50        60        70        80        90       100       110     |   -         -         -         -         -         -         -         -         -         -         -         -       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257  
                                                                                                                                             116                                                                                                                         117                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:258
 aligned with GRIA4_RAT | P19493 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:382
                                   423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793  
            GRIA4_RAT   414 NRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 795
               SCOP domains d3fatb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -3fatB01 B:2-107,B:217-255 Periplasmic binding protein-like II                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3fatB01 B:2-107,B:217-255              ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh.eeeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee..---------------------------------------------------------------------------------------------------------------------------....hhhhhhhh...eeee...hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhh.-... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fat B   1 GRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKG---------------------------------------------------------------------------------------------------------------------------TPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYD-GEC 259
                                    10        20        30        40        50        60        70        80        90       100       110     |   -         -         -         -         -         -         -         -         -         -         -         -       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257  
                                                                                                                                             116                                                                                                                         117                                                                                                                                       255 |  
                                                                                                                                                                                                                                                                                                                                                                                                                     257  


Chain C from PDB  Type:PROTEIN  Length:260
 aligned with GRIA4_RAT | P19493 from UniProtKB/Swiss-Prot  Length:902

    Alignment length:383
                                   423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793   
            GRIA4_RAT   414 NRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEPEDGKEGPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 796
               SCOP domains d3fatc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains -3fatC01 C:2-107,C:217-256 Periplasmic binding protein-like II                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------3fatC01 C:2-107,C:217-256               ---- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh.eeeeee................hhhhhhhhh....ee......hhhhhh.eee....eee.eeeeee..---------------------------------------------------------------------------------------------------------------------------....hhhhhhh....eeee...hhhhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......eee..eee....hhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fat C   1 GRTVVVTTIMESPYVMYKKNHEMFEGNDKYEGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKG---------------------------------------------------------------------------------------------------------------------------TPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYEKMWTYMRSAEPSVFTRTTAEGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWWYDKGECG 260
                                    10        20        30        40        50        60        70        80        90       100       110     |   -         -         -         -         -         -         -         -         -         -         -         -       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257   
                                                                                                                                             116                                                                                                                         117
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FAT)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (GRIA4_RAT | P19493)
molecular function
    GO:0004971    AMPA glutamate receptor activity    An ionotropic glutamate receptor activity that exhibits fast gating by glutamate and acts by opening a cation channel permeable to sodium, potassium, and, in the absence of a GluR2 subunit, calcium.
    GO:0005234    extracellular-glutamate-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when extracellular glutamate has been bound by the channel complex or one of its constituent parts.
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
    GO:0004970    ionotropic glutamate receptor activity    Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004872    receptor activity    Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
    GO:0007268    chemical synaptic transmission    The vesicular release of classical neurotransmitter molecules from a presynapse, across a chemical synapse, the subsequent activation of neurotransmitter receptors at the postsynapse of a target cell (neuron, muscle, or secretory cell) and the effects of this activation on the postsynaptic membrane potential and ionic composition of the postsynaptic cytosol. This process encompasses both spontaneous and evoked release of neurotransmitter and all parts of synaptic vesicle exocytosis. Evoked transmission starts with the arrival of an action potential at the presynapse.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0035235    ionotropic glutamate receptor signaling pathway    A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0050804    modulation of chemical synaptic transmission    Any process that modulates the frequency or amplitude of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. Amplitude, in this case, refers to the change in postsynaptic membrane potential due to a single instance of synaptic transmission.
    GO:0051968    positive regulation of synaptic transmission, glutamatergic    Any process that activates, maintains or increases the frequency, rate or extent of glutamatergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter glutamate.
    GO:0050803    regulation of synapse structure or activity    Any process that modulates the physical form or the activity of a synapse, the junction between a neuron and a target (neuron, muscle, or secretory cell).
    GO:0060992    response to fungicide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fungicide stimulus. Fungicides are chemicals used to kill fungi.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0032281    AMPA glutamate receptor complex    An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. The AMPA receptors mediate fast synaptic transmission in the CNS and are composed of subunits GluR1-4, products from separate genes. These subunits have an extracellular N-terminus and an intracellular C-terminus.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0008328    ionotropic glutamate receptor complex    A multimeric assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand-gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex.
    GO:0032983    kainate selective glutamate receptor complex    An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluK1-3 (also called GluR5-7), GluK4 (KA1) and GluK5 (KA2) subunits.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0014069    postsynaptic density of dendrite    An electron dense network of proteins within and adjacent to the postsynaptic membrane of the dendrite of asymetric synapses. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
    GO:0043195    terminal bouton    Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal bouton is a specialized region of it.

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        GRIA4_RAT | P19493: 3en3 3epe 3fas 3kei 3kfm 4gpa 5fwx

(-) Related Entries Specified in the PDB File

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3fas