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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF THE GLUA4 N-TERMINAL DOMAIN (NTD)
 
Authors :  M. Sukumaran, I. H. Greger
Date :  20 Aug 12  (Deposition) - 24 Oct 12  (Release) - 12 Dec 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pbp Fold, Glutamate Receptor, Ligand-Gated Ion Channel, Ion Transport, Transmembrane Ampa Receptor Regulating Proteins, Tarps, Cornichons, Ckamp44, Glycosylation, Rna Editing, Cell Membrane, Synapse, Extracellular Space, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Dutta, I. H. Shrivastava, M. Sukumaran, I. H. Greger, I. Bahar
Comparative Dynamics Of Nmda- And Ampa-Glutamate Receptor N-Terminal Domains.
Structure V. 20 1838 2012
PubMed-ID: 22959625  |  Reference-DOI: 10.1016/J.STR.2012.08.012

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 4
    ChainsA
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System CellHUMAN EMBRYONIC KIDNEY CELLS
    Expression System Cell LineHEK 293S
    Expression System PlasmidPHLSEC
    Expression System Taxid9606
    FragmentN-TERMINAL DOMAIN
    GeneGLUR4, GRIA4
    Organism CommonBROWN RAT,RAT,RATS
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymGLUR-4, GLUR4, AMPA-SELECTIVE GLUTAMATE RECEPTOR 4, GLUR-D, GLUTAMATE RECEPTOR IONOTROPIC, AMPA 4, GLUA4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 10)
No.NameCountTypeFull Name
1NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:35 , SER A:37 , GLU A:38 , HOH A:767BINDING SITE FOR RESIDUE NAG A 401
2AC2SOFTWAREHIS A:215 , ASN A:237 , GLU A:357 , NAG A:403 , HOH A:566 , HOH A:732BINDING SITE FOR RESIDUE NAG A 402
3AC3SOFTWAREHIS A:127 , NAG A:402 , HOH A:742BINDING SITE FOR RESIDUE NAG A 403
4AC4SOFTWARELYS A:260 , ARG A:332 , GLN A:334 , ASN A:339 , GLN A:341 , ASN A:350 , NAG A:405 , HOH A:585 , HOH A:689 , HOH A:702 , HOH A:743BINDING SITE FOR RESIDUE NAG A 404
5AC5SOFTWARELYS A:260 , ARG A:332 , NAG A:404 , HOH A:689 , HOH A:690 , HOH A:758BINDING SITE FOR RESIDUE NAG A 405

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:310 -A:63

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Lys A:212 -Gly A:213
2Arg A:304 -Gly A:305
3Asn A:313 -Pro A:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GPA)

(-) Exons   (0, 0)

(no "Exon" information available for 4GPA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhhhhhhhh.........eeeeeeee....hhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh..eeee...........eee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh......eeee...hhhhh.hhhhhhhh.eeeeee.....hhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhh.eeee..eeee..........eeeeeeee..eeeeeeeee...eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gpa A   2 FPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLDHYEWNCFVFLYDTDRGYSILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLIQD 380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371         

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GPA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GPA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GPA)

(-) Gene Ontology  (29, 29)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GRIA4_RAT | P194933en3 3epe 3fas 3fat 3kei 3kfm 5fwx

(-) Related Entries Specified in the PDB File

3hsy 3o21