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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUA2, CON-IKOT-IKOT SNAIL TOXIN, PARTIAL AGONIST KA AND POSTITIVE MODULATOR (R,R)-2B COMPLEX
 
Authors :  L. Chen, E. Gouaux
Date :  25 Jul 14  (Deposition) - 13 Aug 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.58
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Ampa Receptor, Transport Protein-Toxin Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Chen, K. L. Durr, E. Gouaux
X-Ray Structures Of Ampa Receptor-Cone Snail Toxin Complexe Illuminate Activation Mechanism.
Science V. 345 1021 2014
PubMed-ID: 25103405  |  Reference-DOI: 10.1126/SCIENCE.1258409

(-) Compounds

Molecule 1 - GLUTAMATE RECEPTOR 2
    Chains: A, B, C, D
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK293S GNTI-
    Expression System Taxid: 9606
    Gene: GRIA2, GLUR2
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: GLUR-2,AMPA-SELECTIVE GLUTAMATE RECEPTOR 2,GLUR-B,GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC,AMPA 2,GLUA2
 
Molecule 2 - CON-IKOT-IKOT
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: STRIATED CONE
    Organism Scientific: CONUS STRIATUS
    Organism Taxid: 6493

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1FWF2Ligand/IonN,N'-[BIPHENYL-4,4'-DIYLDI(2R)PROPANE-2,1-DIYL]DIPROPANE-2-SULFONAMIDE
2KAI4Ligand/Ion3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:450 , PRO A:478 , THR A:480 , ARG A:485 , GLY A:653 , SER A:654 , THR A:655 , GLU A:705binding site for residue KAI A 901
02AC2SOFTWAREPRO A:494 , MET A:496 , SER A:497 , SER A:729 , LYS A:730 , SER A:754 , PRO D:494 , MET D:496 , SER D:497 , SER D:729 , LYS D:730 , SER D:754binding site for residue FWF A 903
03AC3SOFTWARETYR B:450 , PRO B:478 , THR B:480 , ARG B:485 , LEU B:650 , GLY B:653 , SER B:654 , THR B:655 , GLU B:705binding site for residue KAI B 901
04AC4SOFTWARELYS B:493 , PRO B:494 , MET B:496 , SER B:497 , SER B:729 , LYS B:730 , GLY B:731 , LEU B:751 , SER B:754 , LYS C:493 , PRO C:494 , SER C:497 , SER C:729 , SER C:754binding site for residue FWF B 903
05AC5SOFTWARETYR C:450 , PRO C:478 , THR C:480 , ARG C:485 , LEU C:650 , SER C:652 , GLY C:653 , SER C:654 , THR C:655 , GLU C:705binding site for residue KAI C 901
06AC6SOFTWARETYR D:450 , PRO D:478 , THR D:480 , ARG D:485 , LEU D:650 , SER D:652 , GLY D:653 , SER D:654 , THR D:655 , GLU D:705binding site for residue KAI D 901
07AC7SOFTWAREASN A:351 , GLU A:372 , ARG D:660 , TRP D:671 , ARG D:675binding site for Mono-Saccharide NAG A 902 bound to ASN A 351
08AC8SOFTWAREGLU B:335 , ASN B:340 , ASN B:351binding site for Mono-Saccharide NAG B 902 bound to ASN B 351
09AC9SOFTWAREARG B:660 , ARG B:661 , SER B:662 , ARG B:675 , ILE C:350 , ASN C:351 , GLU C:372 , VAL C:373binding site for Mono-Saccharide NAG C 902 bound to ASN C 351
10AD1SOFTWAREASN D:340 , ASN D:351binding site for Mono-Saccharide NAG D 902 bound to ASN D 351

(-) SS Bonds  (21, 21)

Asymmetric/Biological Unit
No.Residues
1A:59 -A:311
2A:718 -A:773
3B:59 -B:311
4B:718 -B:773
5C:59 -C:311
6C:718 -C:773
7D:59 -D:311
8D:718 -D:773
9E:6 -F:6
10E:7 -F:7
11E:12 -E:43
12E:13 -E:52
13E:20 -E:35
14E:53 -E:81
15E:59 -E:76
16E:85 -F:85
17F:12 -F:43
18F:13 -F:52
19F:20 -F:35
20F:53 -F:81
21F:59 -F:76

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Asn A:314 -Pro A:315
2Ser A:403 -Pro A:404
3Glu A:678 -Pro A:679
4Lys A:716 -Pro A:717
5Asn B:314 -Pro B:315
6Ser B:403 -Pro B:404
7Glu B:678 -Pro B:679
8Lys B:716 -Pro B:717
9Asn C:314 -Pro C:315
10Ser C:403 -Pro C:404
11Glu C:678 -Pro C:679
12Lys C:716 -Pro C:717
13Asn D:314 -Pro D:315
14Ser D:403 -Pro D:404
15Glu D:678 -Pro D:679
16Lys D:716 -Pro D:717

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4U5D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4U5D)

(-) Exons   (0, 0)

(no "Exon" information available for 4U5D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:735
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhh..eee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhhh......eeee.........hhhhhh...eeeeee.....hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh.eeee..eeeee.....ee..eeeeeee....eeeeeeee...eeee........eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eeehhhhhhh....ee......hhhhhhhhee.....ee.eeeeee.......hhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh....eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......ee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u5d A   6 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKGERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTEEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWDGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGASLSNVAGVFYILVGGLGLAMLVALIEF 814
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375      |393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       789       799       809     
                                                                                                                                                                                                                                                                                                                                                                                                                  382|                                                                                                                                                    542|                                                                                                                                                                               775|                          
                                                                                                                                                                                                                                                                                                                                                                                                                   391                                                                                                                                                     597                                                                                                                                                                                788                          


Chain B from PDB  Type:PROTEIN  Length:738
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh..eeee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhhh.......eeeee........hhhhhh...eeeeee.....hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh.eeee..eeeee.....ee..eeeeeee....eeeeeeee...eeee............eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eeehhhhhhh....ee......hhhhhhhhee.....ee.eeeeee................hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh...eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......ee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4u5d B   6 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKGERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTESGDLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWDGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGSLSNVAGVFYILVGGLGLAMLVALIEF 814
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385|      399       409       419       429       439       449       459       469       479       489       499       509       519       529       539  ||   603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773||     796       806        
                                                                                                                                                                                                                                                                                                                                                                                                                     385|                                                                                                                                                     542|                                                                                                                                                                              774|                          
                                                                                                                                                                                                                                                                                                                                                                                                                      390                                                                                                                                                      597                                                                                                                                                                               788                          


Chain C from PDB  Type:PROTEIN  Length:747
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh...eee...........eee....hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.......eeeee........hhhhhh...eeeeee.....hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhh.eeee..eeeee.....ee..eeeeeee....eeeeeeee...eeee........eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eeehhhhhhh....ee......hhhhhhheee.....ee.eeeeee........hhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh....eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......ee...eee....hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u5d C   6 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKGERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWDGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 814
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375     ||393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       
                                                                                                                                                                                                                                                                                                                                                                                                                 381|                                                                                                                                                     542|                                                                                                                                                                                                                         
                                                                                                                                                                                                                                                                                                                                                                                                                  390                                                                                                                                                      597                                                                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:742
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...hhhhhhhhhhhhhh.....eeeeeeeee...hhhhhhhhhhhhhhh...eee......hhhhhhhhhhhh...eee...........eee....hhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhhh.......eeeee........hhhhhh...eeeeee.....hhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhh.eeee..eeeee.....ee..eeeeeee....eeeeeeee...eeee...........eeeee.......ee..hhhhhhhhh.eehhhhhhhhhhhhhhh..eeeee......eee......eeehhhhhhh....ee......hhhhhhhhee.....ee.eeeeee.......hhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh...eee....hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeehhhhhhhhh.....eeee......ee...ee.....hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4u5d D   6 NSIQIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLIEYYQWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKGERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVVTLTTSGLEQKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWDGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMAIVFAYILVSVVLFLSARIVAGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGKTSALSLSNVAGVFYILVGGLGLAMLVALIEF 814
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375     ||390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540 ||    604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774|      792       802       812  
                                                                                                                                                                                                                                                                                                                                                                                                                 381|                                                                                                                                                        542|                                                                                                                                                                              774|                               
                                                                                                                                                                                                                                                                                                                                                                                                                  387                                                                                                                                                         597                                                                                                                                                                               783                               


Chain E from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 4u5d E   2 GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA  86
                                    11        21        31        41        51        61        71        81     


Chain F from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 4u5d F   2 GPADCCRMKECCTDRVNECLQRYSGREDKFVSFCYQEATVTCGSFNEIVGCCYGYQMCMIRVVKPNSLSGAHEACKTVSCGNPCA  86
                                    11        21        31        41        51        61        71        81
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4U5D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4U5D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4U5D)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:314 - Pro A:315   [ RasMol ]  
    Asn B:314 - Pro B:315   [ RasMol ]  
    Asn C:314 - Pro C:315   [ RasMol ]  
    Asn D:314 - Pro D:315   [ RasMol ]  
    Glu A:678 - Pro A:679   [ RasMol ]  
    Glu B:678 - Pro B:679   [ RasMol ]  
    Glu C:678 - Pro C:679   [ RasMol ]  
    Glu D:678 - Pro D:679   [ RasMol ]  
    Lys A:716 - Pro A:717   [ RasMol ]  
    Lys B:716 - Pro B:717   [ RasMol ]  
    Lys C:716 - Pro C:717   [ RasMol ]  
    Lys D:716 - Pro D:717   [ RasMol ]  
    Ser A:403 - Pro A:404   [ RasMol ]  
    Ser B:403 - Pro B:404   [ RasMol ]  
    Ser C:403 - Pro C:404   [ RasMol ]  
    Ser D:403 - Pro D:404   [ RasMol ]  
 

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  4u5d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CONII_CONST | P0CB20: 4u5b 4u5c 4u5e 4u5f 4u5g 4u5h
        GRIA2_RAT | P19491: 1ftj 1ftk 1ftl 1ftm 1fto 1fw0 1gr2 1lb8 1lb9 1lbb 1lbc 1m5b 1m5c 1m5d 1m5e 1m5f 1mm6 1mm7 1mqd 1mqg 1mqh 1mqi 1mqj 1ms7 1mxu 1mxv 1mxw 1mxx 1mxy 1mxz 1my0 1my1 1my2 1my3 1my4 1n0t 1nnk 1nnp 1p1n 1p1o 1p1q 1p1u 1p1w 1syh 1syi 1wvj 1xhy 2aix 2al4 2al5 2anj 2cmo 2gfe 2i3v 2i3w 2p2a 2uxa 2xx7 2xx8 2xx9 2xxh 2xxi 3b6q 3b6t 3b6w 3b7d 3bbr 3bft 3bfu 3bki 3dp6 3h03 3h06 3h5v 3h5w 3h6t 3h6u 3h6v 3h6w 3hsy 3ijo 3ijx 3ik6 3il1 3ilt 3ilu 3kg2 3kgc 3lsf 3lsl 3m3l 3n6v 3o28 3o29 3o2a 3o2j 3o6g 3o6h 3o6i 3pd8 3pd9 3pmv 3pmw 3pmx 3rtf 3rtw 3t93 3t96 3t9h 3t9u 3t9v 3t9x 3tdj 3tkd 3tza 4fat 4g8m 4gxs 4h8j 4igt 4isu 4iy5 4iy6 4l17 4lz5 4lz7 4lz8 4n07 4o3a 4o3b 4o3c 4q30 4u1o 4u1w 4u1x 4u1y 4u1z 4u21 4u22 4u23 4u2p 4u2q 4u2r 4u4f 4u4g 4u4s 4u4x 4u5b 4u5c 4u5e 4u5f 4uq6 4uqj 4uqk 4x48 4yma 4yu0 4z0i 5buu 5cbr 5cbs 5elv 5fhm 5fhn 5fho 5fth 5fti 5fwx 5fwy 5ide 5idf 5jei 5kbs 5kbt 5kbu 5kbv 5kk2 5l1b 5l1e 5l1f 5l1g 5l1h 5vhw 5vhx 5vhy 5vhz 5vot 5vou 5vov

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4U5D)