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5FNV
Asym. Unit
Info
Asym.Unit (744 KB)
Biol.Unit 1 (733 KB)
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(1)
Title
:
A NEW COMPLEX STRUCTURE OF TUBULIN WITH AN ALPHA-BETA UNSATURATED LACTONE
Authors
:
Y. Wang, J. Naismith, X. Zhu
Date
:
16 Nov 15 (Deposition) - 18 May 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Structural Protein, Tubulin Complex Alpha-Beta Unsaturated Lactone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Yang, Y. Wang, T. Wang, J. Jiang, C. H. Botting, H. Liu, Q. Chen, J. Yang, J. H. Naismith, X. Zhu, L. Chen
Pironetin Reacts Covalently With Cysteine-316 Of Alpha-Tubulin To Destabilize Microtubule.
Nat. Commun. V. 7 12103 2016
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Hetero Components
(7, 15)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
4b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
4c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
5a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
6a: MAGNESIUM ION (MGa)
6b: MAGNESIUM ION (MGb)
6c: MAGNESIUM ION (MGc)
6d: MAGNESIUM ION (MGd)
7a: PIRONETIN (X3Ha)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
CA
3
Ligand/Ion
CALCIUM ION
3
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
GTP
3
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
5
MES
2
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6
MG
4
Ligand/Ion
MAGNESIUM ION
7
X3H
1
Ligand/Ion
PIRONETIN
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:1439 , HOH A:2001 , HOH A:2002 , HOH A:2004 , HOH A:2005 , HOH A:2006 , HOH A:2007 , HOH A:2009 , LYS B:252
BINDING SITE FOR RESIDUE GTP A1438
02
AC2
SOFTWARE
GTP A:1438 , HOH A:2002 , HOH A:2004 , HOH A:2005 , HOH A:2006
BINDING SITE FOR RESIDUE MG A1439
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55
BINDING SITE FOR RESIDUE CA A1440
04
AC4
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:138 , GLY B:141 , GLY B:142 , THR B:143 , GLY B:144 , PRO B:171 , VAL B:175 , ASP B:177 , GLU B:181 , ASN B:204 , TYR B:222 , ASN B:226 , MG B:1430 , HOH B:2001 , HOH B:2002 , HOH B:2003 , HOH B:2004 , HOH B:2007 , HOH B:2008
BINDING SITE FOR RESIDUE GDP B1429
05
AC5
SOFTWARE
GLN B:11 , ASP B:177 , GDP B:1429 , HOH B:2002
BINDING SITE FOR RESIDUE MG B1430
06
AC6
SOFTWARE
GLU B:111 , TYR C:282
BINDING SITE FOR RESIDUE CA B1431
07
AC7
SOFTWARE
ARG B:156 , PRO B:160 , ASP B:161 , ARG B:162 , ASN B:195 , ASP B:197 , ARG B:251
BINDING SITE FOR RESIDUE MES B1432
08
AC8
SOFTWARE
PHE B:294 , ASP B:295 , ALA B:296 , ASP B:304 , ARG B:306 , ASN B:337 , TYR B:340 , HOH B:2013
BINDING SITE FOR RESIDUE MES B1433
09
AC9
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:1441 , HOH C:2002 , HOH C:2003 , HOH C:2005 , HOH C:2006 , HOH C:2008 , HOH C:2015 , HOH C:2020 , LYS D:252
BINDING SITE FOR RESIDUE GTP C1440
10
BC1
SOFTWARE
GTP C:1440 , HOH C:2003 , HOH C:2005 , HOH C:2006 , HOH C:2008
BINDING SITE FOR RESIDUE MG C1441
11
BC2
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55
BINDING SITE FOR RESIDUE CA C1442
12
BC3
SOFTWARE
LYS F:74 , ILE F:148 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ASP F:200 , ARG F:202 , ARG F:222 , HIS F:239 , THR F:241 , ASN F:242 , ASP F:318 , ILE F:330 , GLU F:331 , ASN F:333
BINDING SITE FOR RESIDUE ACP F1385
13
BC4
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , ALA D:97 , GLY D:98 , ASN D:99 , SER D:138 , GLY D:141 , GLY D:142 , THR D:143 , GLY D:144 , SER D:176 , GLU D:181 , ASN D:204 , TYR D:222 , ASN D:226 , MG D:1432
BINDING SITE FOR RESIDUE GTP D1431
14
BC5
SOFTWARE
GLU D:69 , GTP D:1431
BINDING SITE FOR RESIDUE MG D1432
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (744 KB)
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