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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINO ACIDS 1562-1622 OF MYH7
 
Authors :  N. E. Korkmaz, K. C. Taylor, M. P. Andreas, G. Ajay, N. T. Heinze, Q. Cui, I
Date :  13 Jul 15  (Deposition) - 02 Dec 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Myosin, Coiled-Coil, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. N. Korkmaz, K. C. Taylor, M. P. Andreas, G. Ajay, N. T. Heinze, Q. Cui, I. Rayment
A Composite Approach Towards A Complete Model Of The Myosin Rod.
Proteins V. 84 172 2016
PubMed-ID: 26573747  |  Reference-DOI: 10.1002/PROT.24964

(-) Compounds

Molecule 1 - XRCC4-MYH7-(1562-1622) CHIMERA PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP Q13426 RESIDUES 2-144, UNP P12883 1562-1622
    Gene: XRCC4, MYH7, MYHCB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: LYSINES WERE REDUCTIVELY ALKYLATED TO DIMETHYLLYSINE.
    Synonym: X-RAY REPAIR CROSS-COMPLEMENTING PROTEIN 4,MYOSIN HEAVY CHAIN 7,MYOSIN HEAVY CHAIN SLOW ISOFORM,MYHC-SLOW,MYOSIN HEAVY CHAIN, CARDIAC MUSCLE BETA ISOFORM,MYHC-BETA

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 60)

Asymmetric Unit (1, 60)
No.NameCountTypeFull Name
1MLY60Mod. Amino AcidN-DIMETHYL-LYSINE
Biological Unit 1 (1, 29)
No.NameCountTypeFull Name
1MLY29Mod. Amino AcidN-DIMETHYL-LYSINE
Biological Unit 2 (1, 31)
No.NameCountTypeFull Name
1MLY31Mod. Amino AcidN-DIMETHYL-LYSINE

(-) Sites  (0, 0)

(no "Site" information available for 5CJ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CJ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJ4)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                   
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeeeee..hhhh.eeeeee....eeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeeee....eeeeeeee..eeeeeeeee.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cj4 A    1 GERkISRIHLVSEPSITHFLQVSWEkTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEkGkYVGELRkALLSGDVYTFNFSkESCYFFFEkNLkDVSFRLGSFNLEkVENPAEVIRELICYCLDTTAENQAkNEHLQLEFNQIkAEIERkLAEkDEEMEQAkRNHLRVVDSLQTSLDAETRSRNEALRVk 1615
                               |    10        20     |  30        40        50        60  | |   70 |    ||84     |  94    |  104       114|      124       134     | 144|     1571   |  1581     |1591      1601      1611   |
                               |                    26-MLY                               63-MLY   72-MLY7|      90-MLY   99-MLY         115-MLY                  140-MLY|      |     |   |       |                        1615-MLY
                               4-MLY                                                       65-MLY       82                 102-MLY                                   1562      |     |   |       |                            
                                                                                                                                                                            1569-MLY |   |       |                            
                                                                                                                                                                                  1575-MLY       |                            
                                                                                                                                                                                      1579-MLY   |                            
                                                                                                                                                                                              1587-MLY                        


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.........eeeeeee..hhhhheeeeee....eeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhh.......eeeeee....eeeeeeee..eeeeeeeee.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cj4 B    1 GERkISRIHLVSEPSITHFLQVSWEkTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEkGkYVGELRkALLSGAGADVYTFNFSkESCYFFFEkNLkDVSFRLGSFNLEkVENPAEVIRELICYCLDTTAENQAkNEHLQLEFNQIkAEIERkLAEkDEEMEQAkRNHLRVVDSLQTSLDAETRSR 1608
                               |    10        20     |  30        40        50        60  | |   70 |      81        91       101|      111   |   121       131       141  ||  1568|     1578|     1588      1598      1608
                               |                    26-MLY                               63-MLY   72-MLY 79|       90-MLY   99-MLY         115-MLY                  140-MLY|      |     |   |       |                     
                               4-MLY                                                       65-MLY         81                  102-MLY                                   1562      |     |   |       |                     
                                                                                                                                                                               1569-MLY |   |       |                     
                                                                                                                                                                                     1575-MLY       |                     
                                                                                                                                                                                         1579-MLY   |                     
                                                                                                                                                                                                 1587-MLY                 


Chain C from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......eeeeeeee..hhh.eeeeeee....eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhh...eeeeee....eeeeeee....eeeeeeee.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cj4 C    1 GERkISRIHLVSEPSITHFLQVSWEkTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEkGkYVGELRkALLSDVYTFNFSkESCYFFFEkNLkDVSFRLGSFNLEkVENPAEVIRELICYCLDTTAENQAkNEHLQLEFNQIkAEIERkLAEkDEEMEQAkRNHLRVVDSLQTSLDAETRSRNEALRVkkkME 1619
                               |    10        20     |  30        40        50        60  | |   70 |   || 85    |   95   |  |105       115       125       135    | 1562      1572  |   1582    | 1592      1602      1612  |||  
                               4-MLY                26-MLY                               63-MLY   72-MLY|      90-MLY   99-MLY         115-MLY                  140-MLY|      |     |   |       |                        1615-MLY
                                                                                           65-MLY      82                 102-MLY                                   1562      |     |   |       |                         1616-MLY
                                                                                                                                                                           1569-MLY |   |       |                          1617-MLY
                                                                                                                                                                                 1575-MLY       |                                
                                                                                                                                                                                     1579-MLY   |                                
                                                                                                                                                                                             1587-MLY                            


Chain D from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......eeeeeeee..hhh.eeeeeee....eeeeeeehhhhhhhhhhh..hhhhhhhhhhhhhh..eeeeee....eeeeeeee..eeeeeeeee.ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5cj4 D    1 GERkISRIHLVSEPSITHFLQVSWEkTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEkGkYVGELRkALLSVYTFNFSkESCYFFFEkNLkDVSFRLGSFNLEkVENPAEVIRELICYCLDTTAENQAkNEHLQLEFNQIkAEIERkLAEkDEEMEQAkRNHLRVVDSLQTSLDAETRSRNEAL 1612
                               |    10        20     |  30        40        50        60  | |   70 |   || 86   |    96  |  | 106       116       126       136   |  1563     |1573 |   |1583   |  1593      1603         
                               4-MLY                26-MLY                               63-MLY   72-MLY|     90-MLY   99-MLY         115-MLY                  140-MLY|      |     |   |       |                         
                                                                                           65-MLY      83                102-MLY                                   1562      |     |   |       |                         
                                                                                                                                                                          1569-MLY |   |       |                         
                                                                                                                                                                                1575-MLY       |                         
                                                                                                                                                                                    1579-MLY   |                         
                                                                                                                                                                                            1587-MLY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJ4)

(-) Gene Ontology  (55, 56)

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  MYH7_HUMAN | P12883
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  XRCC4_HUMAN | Q13426
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MYH7_HUMAN | P12883: 1ik2 2fxm 2fxo 3dtp 4db1 4p7h 4pa0 4xa1 4xa3 4xa4 4xa6 5chx 5cj0 5cj1 5tby
        XRCC4_HUMAN | Q13426: 1fu1 1ik9 3ii6 3mud 3q4f 3rwr 3sr2 3w03 4xa4 5chx 5cj0 5e50

(-) Related Entries Specified in the PDB File

5chx 5cj0 5cj1