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(-) Description

Title :  CRYSTAL STRUCTURE OF RSV F IN COMPLEX WITH HUMAN ANTIBODY HRSV90
 
Authors :  J. J. Mousa, J. E. Crowe
Date :  20 Oct 16  (Deposition) - 01 Feb 17  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.14
Chains :  Asym./Biol. Unit :  A,H,L
Keywords :  Fusion Protein, Respiratory Syncytial Virus, Antibody, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Mousa, J. E. Crowe
Crystal Structure Of Rsv F In Complex With Human Antibody Hrsv90
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FUSION GLYCOPROTEIN F0,FIBRITIN
    Chains: A
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Common: HUMAN
    Expression System Taxid: 9606
    Gene: WAC
    Mutation: YES
    Organism Scientific: HUMAN RESPIRATORY SYNCYTIAL VIRUS A, ENTEROBACTERIA PHAGE OX2
    Organism Taxid: 11259, 10691
    Strain: A2
    Synonym: PROTEIN F
 
Molecule 2 - HRSV90 HEAVY CHAIN
    Chains: H
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - HRSV0 LIGHT CHAIN
    Chains: L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : AHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TPN)

(-) Sites  (0, 0)

(no "Site" information available for 5TPN)

(-) SS Bonds  (11, 11)

Asymmetric/Biological Unit
No.Residues
1A:37 -A:439
2A:69 -A:212
3A:313 -A:343
4A:322 -A:333
5A:358 -A:367
6A:382 -A:393
7A:416 -A:422
8H:23 -H:104
9H:155 -H:211
10L:23 -L:104
11L:150 -L:210

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Ser A:211 -Cys A:212
2Thr A:245 -Pro A:246
3Phe H:161 -Pro H:162
4Glu H:163 -Pro H:164
5Ser L:7 -Pro L:8
6Trp L:110 -Pro L:111
7Tyr L:156 -Pro L:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TPN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TPN)

(-) Exons   (0, 0)

(no "Exon" information available for 5TPN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeeeeeeeeeeeeeeeeeeee............hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh.....hhhhhhhhhhhhh.hhhhhhhhhh.....eeee.....eeeeeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeeee.....eeeeeee..............eeee...eeeeee..eeee.......eee..eeeee....eeehhhhhhhhh.........eeeee.....eeee...eeeeee.....eeeee...eeeee...eeeeee.....eeee..eeee......eeeee...hhhhhh...........eehhhhhhhhhhhhhhhhhhhhhhhhh.............eeee..eeee.hhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tpn A   27 NITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKKIKCNGTDAKIKLIKQELDKYKNAVTELQLLMQSTPATNNSGRSLGFLLGVGSAIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYIDKQLLPIVNKQSCSIPNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLPLYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDQFDASISQVNEKINQSLAFIRKSDELLSAIGGYIPEAPRDGQAYVRKDGEWVLLSTFL  544
                                    36        46        56        66        76        86        96       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544
                                                                                                        105|                                                                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                         134                                                                                                                                                                                                                                                                                                                                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...ee.....eeeeeeee.......eeeeeee.....eeeeeeee.....eee.......eeeee.....eeeeee.........eeeeeee............eeee......ee........eeeee...eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh....eeeeee........eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tpn H    2 VQLVESGGGLVQPRRSLRLSCAASGFTFDDYTIHWVRQAPGKGLEWVSGITWNSGYIGYADSVKGRFTISRDNARNSLYLQMNSLRAEDTALYYCVRDAYVSGSDYYYYGLDVWGRGTLVTVSSASTKGPSVFPLAPGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP  228
                                   |12        22       |36        46        56  ||    68   ||   79        89        99       109  |||||114       124       134      |151       161       171       181       191       201       211       221       
                                   9|                 30|                      59|        72|                                  111A||||                           141|                                                                               
                                   11                  35                       62         74                                   111B|||                            149                                                                               
                                                                                                                                 112C||                                                                                                              
                                                                                                                                  112B|                                                                                                              
                                                                                                                                   112A                                                                                                              


Chain L from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee........ee.....eeeeee...hhhhh.eeeeee......ee...eeeee.......eeeee..hhhhhhh.eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5tpn L    1 EIVMTSSPATLSVSPGERVTLFCRASQSVISNLAWYQQKSGQAPRLLIYGASTRATGIPSRFSGSGSGTEFTLTISSLQSEDFAVYFCQQYNNWPLTFGGGTQVNVQRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  230
                                    10        20        36        46        56||      74     || 86        96       106       116       126       136       146       156       166       176       186       196       206       216       226    
                                                       29|                   57|     72|    80|                                                                                                                                                   
                                                        36                    65      74     83
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TPN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TPN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TPN)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 5tpn)
 
  Sites
(no "Sites" information available for 5tpn)
 
  Cis Peptide Bonds
    Glu H:163 - Pro H:164   [ RasMol ]  
    Phe H:161 - Pro H:162   [ RasMol ]  
    Ser A:211 - Cys A:212   [ RasMol ]  
    Ser L:7 - Pro L:8   [ RasMol ]  
    Thr A:245 - Pro A:246   [ RasMol ]  
    Trp L:110 - Pro L:111   [ RasMol ]  
    Tyr L:156 - Pro L:157   [ RasMol ]  
 

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  5tpn
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  FUS_HRSVA | P03420
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  Q38650_BPOX2 | Q38650
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FUS_HRSVA | P03420: 2mdp 3ixt 3kpe 3o41 3o45 3rki 3rrr 3rrt 4ccf 4jhw 4mmq 4mmr 4mms 4mmt 4mmu 4mmv 4zyp 5c69 5c6b 5ea3 5ea4 5ea5 5ea6 5ea7 5ea8 5j3d 5k6b 5k6c 5k6f 5k6g 5k6h 5k6i 5toj 5tok 5u68 5udc
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        Q38650_BPOX2 | Q38650: 1u0p 2ibl 5c69 5c6b

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5TPN)