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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1160) IN COMPLEX WITH AMPPNP AND MN FROM ARABIDOPSIS THALIANA
 
Authors :  D. Bojar, J. Martinez, M. Hothorn
Date :  15 Aug 16  (Deposition) - 31 Aug 16  (Release) - 31 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Brassinosteroid Receptor, Kinase Domain, Dual-Specificify Kinase, Membrane Receptor Kinase, Plasma Membrane, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bojar, J. Martinez, J. Santiago, V. Rybin, R. Bayliss, M. Hothorn
Crystal Structures Of The Phosphorylated Bri1 Kinase Domain And Implications For Brassinosteroid Signal Initiation.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN BRASSINOSTEROID INSENSITIVE 1
    Chains: A
    EC Number: 2.7.10.1, 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMH-HT
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Gene: BRI1, AT4G39400, F23K16.30
    Mutation: YES
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATBRI1,BRASSINOSTEROID LRR RECEPTOR KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MN2Ligand/IonMANGANESE (II) ION
3SEP2Mod. Amino AcidPHOSPHOSERINE
4TPO1Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:892 , PHE A:894 , VAL A:897 , ALA A:909 , LYS A:911 , GLU A:957 , MET A:959 , SER A:963 , ASP A:966 , ASP A:1009 , LYS A:1011 , SER A:1013 , ASN A:1014 , LEU A:1016 , ASP A:1027 , MN A:1201 , MN A:1202 , HOH A:1308 , HOH A:1310binding site for residue ANP A 1200
2AC2SOFTWAREASN A:1014 , ASP A:1027 , ANP A:1200binding site for residue MN A 1201
3AC3SOFTWAREASP A:1027 , ANP A:1200binding site for residue MN A 1202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LPV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:1002 -Pro A:1003
2Asp A:1087 -Ser A:1088

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LPV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LPV)

(-) Exons   (0, 0)

(no "Exon" information available for 5LPV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                              
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhh...hhh.eee....eeeeeee.....eeeeeee......hhhhhhhhhhhhhhh.......eeeeeee..eeeeeee.....hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh...eee........eee.....eee......eee......ee............hhhhhh.eehhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lpv A  867 PLRKLAFADLLQATNGFHNDSLIGSGGFGDVYKAILKDGSAVAIKKLIHVSGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGDERLLVYEFMKYGSLEDVLHDGVKLNWSTRRKIAIGSARGLAFLHHNCSPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDtHLsVsTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSPNLVGWVKQHAKLRISDVFDPELMKEDPALEIELLQHLKVAVACLDDRAWRRPTMVQVMAMFKEIQA 1160
                                   876       886       896       906       916       926       936       946       956       966   ||  980       990      1000      1010      1020      1030      1040 | |  1050      1060      1070      1080      1095      1105      1115      1125      1135      1145      1155     
                                                                                                                                 970|                                                            1039-TPO|                                         1089|                                                                 
                                                                                                                                  975                                                               1042-SEP                                        1095                                                                 
                                                                                                                                                                                                      1044-SEP
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LPV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LPV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LPV)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRI1_ARATH | O22476: 3rgx 3rgz 3riz 3rj0 4lsa 4lsx 4m7e 4oh4 4q5j 5lpb 5lpw 5lpy 5lpz

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LPV)