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(-) Description

Title :  STRUCTURAL INSIGHT INTO BRASSINOSTEROID PERCEPTION BY BRI1
 
Authors :  J. Chai, Z. Han, J. She, J. Wang, W. Cheng
Date :  11 Apr 11  (Deposition) - 15 Jun 11  (Release) - 24 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym./Biol. Unit :  A
Keywords :  Phytohormone, Brassinosteroid-Insensitive 1, Leucine-Rich Repeat Receptor-Like Kinases, Leucine-Rich Repeat, Brassinosteroid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. She, Z. Han, T. W. Kim, J. Wang, W. Cheng, J. Chang, S. Shi, J. Wang, M. Yang, Z. Y. Wang, J. Chai
Structural Insight Into Brassinosteroid Perception By Bri1.
Nature V. 474 472 2011
PubMed-ID: 21666666  |  Reference-DOI: 10.1038/NATURE10178

(-) Compounds

Molecule 1 - PROTEIN BRASSINOSTEROID INSENSITIVE 1
    ChainsA
    EC Number2.7.10.1, 2.7.11.1
    EngineeredYES
    Expression System Cell LineHIGH-5
    Expression System PlasmidPFASTBAC 1
    Expression System Vector TypeBACULOVIRUS
    FragmentUNP RESIDUES 23-785
    GeneBRI1, AT4G39400, F23K16.30
    Organism CommonMOUSE-EAR CRESS,THALE-CRESS
    Organism ScientificARABIDOPSIS THALIANA
    Organism Taxid3702
    Other DetailsINVITROGENTM
    SynonymBRI1, ATBRI1, BRASSINOSTEROID LRR RECEPTOR KINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric/Biological Unit (3, 18)
No.NameCountTypeFull Name
1BLD1Ligand/IonBRASSINOLIDE
2NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:130 , ASN A:154 , SER A:156 , ASP A:179 , HIS A:204 , HOH A:931 , HOH A:1052 , HOH A:1080 , NAG A:1542BINDING SITE FOR RESIDUE NAG A 1541
02AC2SOFTWARENAG A:1541 , NAG A:1543BINDING SITE FOR RESIDUE NAG A 1542
03AC3SOFTWARENAG A:1542BINDING SITE FOR RESIDUE NAG A 1543
04AC4SOFTWARESER A:253 , ASN A:275 , SER A:277 , TYR A:295 , HOH A:921 , HOH A:933 , HOH A:957 , NAG A:2752BINDING SITE FOR RESIDUE NAG A 2751
05AC5SOFTWAREHOH A:1040 , NAG A:2751BINDING SITE FOR RESIDUE NAG A 2752
06AC6SOFTWAREASN A:545 , GLU A:608 , HIS A:610 , ARG A:632 , PRO A:634 , HOH A:808 , HOH A:833 , HOH A:857 , HOH A:920 , HOH A:926 , NAG A:5452BINDING SITE FOR RESIDUE NAG A 5451
07AC7SOFTWARETHR A:631 , PRO A:634 , NAG A:5451 , NAG A:5453BINDING SITE FOR RESIDUE NAG A 5452
08AC8SOFTWARESER A:630 , THR A:631 , NAG A:5452 , NAG A:5454BINDING SITE FOR RESIDUE NAG A 5453
09AC9SOFTWARENAG A:5453BINDING SITE FOR RESIDUE NAG A 5454
10BC1SOFTWAREASN A:573 , NAG A:5732BINDING SITE FOR RESIDUE NAG A 5731
11BC2SOFTWARENAG A:5731BINDING SITE FOR RESIDUE NAG A 5732
12BC3SOFTWARETYR A:597 , TYR A:599 , LYS A:601 , TYR A:642 , THR A:646 , SER A:647 , ASN A:705 , ILE A:706 , HOH A:810 , HOH A:827 , HOH A:876 , HOH A:978 , HOH A:1042BINDING SITE FOR RESIDUE BLD A 800
13BC4SOFTWARESER A:31 , TYR A:33 , ARG A:34 , PRO A:768 , ARG A:769 , HOH A:798 , HOH A:994 , HOH A:1003 , HOH A:1005BINDING SITE FOR RESIDUE SO4 A 900
14BC5SOFTWAREASN A:112BINDING SITE FOR RESIDUE NAG A 1121
15BC6SOFTWAREASN A:233 , HOH A:1050 , NAG A:2332BINDING SITE FOR RESIDUE NAG A 2331
16BC7SOFTWARENAG A:2331BINDING SITE FOR RESIDUE NAG A 2332
17BC8SOFTWAREASN A:351 , GLU A:376 , HOH A:1074BINDING SITE FOR RESIDUE NAG A 3511
18BC9SOFTWAREMET A:485 , ASN A:510BINDING SITE FOR RESIDUE NAG A 5101

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:62 -A:69
2A:120 -A:147
3A:199 -A:221
4A:244 -A:268
5A:315 -A:339
6A:411 -A:439
7A:609 -A:635
8A:763 -A:770

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:765 -Pro A:766

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3RGZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3RGZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3RGZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:745
 aligned with BRI1_ARATH | O22476 from UniProtKB/Swiss-Prot  Length:1196

    Alignment length:745
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769     
           BRI1_ARATH    30 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 774
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---LRRNT_2-3rgzA07 A:33-70               -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-3rgzA05 A:316-377                                       -------------------------------------------------------------------------------------------------------------------------------------LRR_6-3rgzA03 A:511-534 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_1-3rgzA01 A:727-756       ------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-3rgzA06 A:316-377                                       -------------------------------------------------------------------------------------------------------------------------------------LRR_6-3rgzA04 A:511-534 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_1-3rgzA02 A:727-756       ------------------ Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhh...............hhhhh..eeee..eeeeee.......eehhhhhhhh.......eee.....eee............eee....eeeee.hhhhhhhhh....eee....eee...............eee......eeehhhhhhhh.......eee....eee............eee....................eee........hhhhhh.......eee......ee...........eee....eeee..............eee....eeee..hhhhhhh....eee....eeeee.hhhhhh......eee....eeee....hhhhhh....eee....eeeee..............eee....eeeee.hhhhhhh....eee....eee...hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee......eee.hhhhhhh....eee....eeeee.hhhhhh.............eeeeee...........eeeee....hhhhhhhhhhh........eeeee............eee....eee...hhhhhhh....eee..........hhhhhhh....eee......ee..hhhhhhh....eee....eeeee.....hhhhhhhhhhh...eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3rgz A  30 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 774
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3RGZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3RGZ)

(-) Pfam Domains  (4, 7)

Asymmetric/Biological Unit
(-)
Clan: LRR (77)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BRI1_ARATH | O22476)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0004713    protein tyrosine kinase activity    Catalysis of the reaction: ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0005496    steroid binding    Interacting selectively and non-covalently with a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0004714    transmembrane receptor protein tyrosine kinase activity    Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP + a protein-L-tyrosine = ADP + a protein-L-tyrosine phosphate.
biological process
    GO:0048657    anther wall tapetum cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an anther cell wall tapetum cell. The tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature.
    GO:0010268    brassinosteroid homeostasis    Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell.
    GO:0009742    brassinosteroid mediated signaling pathway    A series of molecular signals mediated by the detection of brassinosteroid.
    GO:0009729    detection of brassinosteroid stimulus    The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal.
    GO:0048366    leaf development    The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure.
    GO:0060548    negative regulation of cell death    Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
    GO:0018108    peptidyl-tyrosine phosphorylation    The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0010584    pollen exine formation    The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine.
    GO:0009911    positive regulation of flower development    Any process that activates or increases the frequency, rate or extent of flower development.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:1900140    regulation of seedling development    Any process that modulates the frequency, rate or extent of seedling development.
    GO:0010224    response to UV-B    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
cellular component
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BRI1_ARATH | O224763rgx 3riz 3rj0 4lsa 4lsx 4m7e 4oh4 4q5j 5lpb 5lpv 5lpw 5lpy 5lpz

(-) Related Entries Specified in the PDB File

3rgx