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(-) Description

Title :  STRUCTURAL INSIGHT INTO BL-INDUCED ACTIVATION OF THE BRI1-BAK1 COMPLEX
 
Authors :  J. Chai, Z. Han, Y. Sun
Date :  12 Aug 13  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Phytohormone, Brassinosteroid-Insensitive 1, Leucine-Rich Repeat, Receptor-Like Kinases, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Sun, Z. Han, J. Chai
Structural Insight Into Bl-Induced Activation Of The Bri1-Bak1 Complex
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN BRASSINOSTEROID INSENSITIVE 1
    Chains: A, B
    EC Number: 2.7.10.1, 2.7.11.1
    Engineered: YES
    Expression System Cell: HIGH FIVE
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 24-785
    Gene: BRI1, AT4G39400, F23K16.30
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATBRI1, BRASSINOSTEROID LRR RECEPTOR KINASE
 
Molecule 2 - BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1
    Chains: D, C
    EC Number: 2.7.10.1, 2.7.11.1
    Engineered: YES
    Expression System Cell: HIGH FIVE
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 26-221
    Gene: BAK1, ELG, SERK3, AT4G33430, F17M5.190
    Organism Common: MOUSE-EAR CRESS,THALE-CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATBAK1, BRI1-ASSOCIATED RECEPTOR KINASE 1, PROTEIN ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR KINASE 3, ATSERK3, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1BLD2Ligand/IonBRASSINOLIDE
2NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
1BLD1Ligand/IonBRASSINOLIDE
2NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1BLD1Ligand/IonBRASSINOLIDE
2NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:608 , THR A:631 , PRO A:634 , NAG A:805BINDING SITE FOR RESIDUE NAG A 806
02AC2SOFTWAREARG A:596 , GLN A:619 , HIS A:645BINDING SITE FOR RESIDUE SO4 A 807
03AC3SOFTWAREILE A:563 , TRP A:564 , TYR A:597 , LYS A:601 , TYR A:642 , THR A:646 , SER A:647 , PRO A:648 , MET A:657 , PHE A:681 , ASN A:705 , ILE A:706 , TRP C:59 , PHE C:60 , HIS C:61 , VAL C:62BINDING SITE FOR RESIDUE BLD A 808
04AC4SOFTWAREARG B:596 , HIS B:645BINDING SITE FOR RESIDUE SO4 B 806
05AC5SOFTWAREILE B:563 , TRP B:564 , TYR B:597 , LYS B:601 , TYR B:642 , THR B:646 , SER B:647 , PRO B:648 , MET B:657 , PHE B:681 , ILE B:682 , ASN B:705 , ILE B:706 , TRP D:59 , PHE D:60 , HIS D:61 , VAL D:62BINDING SITE FOR RESIDUE BLD B 807
06AC6SOFTWARESER A:107 , SER A:130 , ARG A:131 , PHE A:152 , ASN A:154 , SER A:156 , ASP A:179 , HIS A:204BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 154 RESIDUES 801 TO 802
07AC7SOFTWARESER A:253 , LEU A:273 , ASN A:275 , SER A:277 , TYR A:295BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 275 RESIDUES 803 TO 804
08AC8SOFTWAREASN A:545 , THR A:569 , HIS A:610 , ARG A:632 , ASN A:633 , PRO A:634 , NAG A:806BINDING SITE FOR MONO-SACCHARIDE NAG A 805 BOUND TO ASN A 545
09AC9SOFTWARESER B:107 , SER B:130 , ARG B:131 , PHE B:152 , ASN B:154 , SER B:157 , ASP B:179 , HIS B:204BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 154 RESIDUES 801 TO 802
10BC1SOFTWARESER B:253 , ASN B:275 , SER B:277 , SER B:278BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 275 RESIDUES 803 TO 804
11BC2SOFTWAREASN B:545 , THR B:569 , GLU B:608 , ARG B:632 , ASN B:633 , PRO B:634BINDING SITE FOR MONO-SACCHARIDE NAG B 805 BOUND TO ASN B 545

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:62 -A:69
2A:120 -A:147
3A:199 -A:221
4A:244 -A:268
5A:315 -A:339
6A:411 -A:439
7A:609 -A:635
8B:62 -B:69
9B:120 -B:147
10B:199 -B:221
11B:244 -B:268
12B:315 -B:339
13B:411 -B:439
14B:609 -B:635
15C:57 -C:64
16D:57 -D:64

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro A:47 -Asp A:48

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M7E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M7E)

(-) Exons   (0, 0)

(no "Exon" information available for 4M7E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:733
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...............hhhhh..eee....eeeee........hhhhhhhhh.......eee....................eee........hhhhhhhhhhh....eee......................eee.........hhhhhhh........eee...................eee....................eee.........hhhhhh......eee......ee...........eee....eeeee.hhhhhhhhhh..eee....eeee..hhhhhh.....eee....eeeee.hhhhhh......eee....eee...hhhhhhhhhhh.eee......ee...............eee....ee....hhhhhhh....eee..........hhhhhhh.....ee..........hhhhhhh....eee..........hhhhhhh....eee............hhhhh....eee......ee..hhhhhhh....eee....ee.....hhhhh.............eeeeee...........eeeee.......hhhhhh..........eeeee............eee......ee..hhhhhh.....eee....eeee..hhhhhhh....eee....eeee..hhhhhhh....eee....eeee.....hhhhhhhhhhhh...ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7e A  34 REIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 766
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763   


Chain B from PDB  Type:PROTEIN  Length:734
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh.............hhhhh..eee....eeeee........hhhhhhhhh.......eee....................eee........hhhhhhhhhhh....eee......................eee.........hhhhhhh........eee...................eee....................eee........hhhhhhh......eee......ee...........eee....eeeee.............eee....eeee..hhhhhh.....eee....eeee..hhhhhh......eee....ee....hhhhhhhhhhh.eee.......................eee..........hhhhhhh....eee..........hhhhhhh.....ee..........hhhhhhh....eee..........hhhhhhh....eee............hhhhh....eee..........hhhhhhh....eee...........hhhhh.............eeeeee...........eeeee....hhhhhhhhh..........eeeee............eee......ee..hhhhhh.....eee....eeee..hhhhhhh....eee....eeee..hhhhhhh....eee....eeee...........hhhhhh...ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7e B  30 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 763
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759    


Chain C from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhee.....................eee.....eeeee......eee.hhhhhhh....eee....eee...hhhhhhh....eee..........hhhhhhh....eee.....................ee..............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7e C  26 NAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLT 200
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     


Chain D from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhee....hhhhh.....hhhhh..eee.....eeeee......eee.hhhhhhh....eee....eee...hhhhh......eee..........hhhhhhh....eee.....................ee..............hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m7e D  26 NAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLT 200
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M7E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M7E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M7E)

(-) Gene Ontology  (35, 52)

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  4m7e
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  BRI1_ARATH | O22476
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        BAK1_ARATH | Q94F62: 3tl8 3uim 3ulz 4mn8
        BRI1_ARATH | O22476: 3rgx 3rgz 3riz 3rj0 4lsa 4lsx 4oh4 4q5j 5lpb 5lpv 5lpw 5lpy 5lpz

(-) Related Entries Specified in the PDB File

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