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Title :   PLANT STEROID RECEPTOR ECTODOMAIN BOUND TO BRASSINOLIDE AND SERK1 CO-RECEPTOR ECTODOMAIN

Authors :   J. Santiago, C. Henzler, M. Hothorn

Date :   23 Jul 13 (Deposition) - 04 Sep 13 (Release) - 04 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Lrr-Domain, Membrane Signaling Complex Receptor Co-Receptor Complex, Brassinosteroid Binding, N-Glycosylation, Steroid Binding Protein- Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Santiago, C. Henzler, M. Hothorn
Molecular Mechanism For Plant Steroid Receptor Activation B Somatic Embryogenesis Co-Receptor Kinases.
Science V. 341 889 2013
PubMed-ID: 23929946 | Reference-DOI: 10.1126/SCIENCE.1242468

Molecule 1 - PROTEIN BRASSINOSTEROID INSENSITIVE 1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Common	:	CABBAGE LOOPER
	Expression System Plasmid	:	PBAC-6 MOD.
	Expression System Strain	:	TNAO38
	Expression System Taxid	:	7111
	Expression System Vector Type	:	PLASMID/BACULOVIRUS
	Fragment	:	RECEPTOR ECTODOMAIN/LRR-DOMAIN (UNP RESIDUES 29-788)
	Gene	:	AT4G39400, BRI1, F23K16.30
	Mutation	:	YES
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Strain	:	COL 0
	Synonym	:	ATBRI1, BRASSINOSTEROID LRR RECEPTOR KINASE

Molecule 2 - SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Common	:	CABBAGE LOOPER
	Expression System Plasmid	:	PBAC-6 MOD.
	Expression System Strain	:	TNAO38
	Expression System Taxid	:	7111
	Expression System Vector Type	:	PLASMID/BACULOVIRUS
	Fragment	:	CO-RECEPTOR KINASE ECTODOMAIN/LRR-DOMAIN (UNP RESIDUES 24- 213)
	Gene	:	AT1G71830, F14O23.21, F14O23_24, SERK1
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Strain	:	COL 0
	Synonym	:	ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 33)

No.	Name	Count	Type	Full Name
1	BLD	2	Ligand/Ion	BRASSINOLIDE
2	BMA	5	Ligand/Ion	BETA-D-MANNOSE
3	MAN	5	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	21	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (4, 16)

No.	Name	Count	Type	Full Name
1	BLD	1	Ligand/Ion	BRASSINOLIDE
2	BMA	2	Ligand/Ion	BETA-D-MANNOSE
3	MAN	3	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	10	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (4, 17)

No.	Name	Count	Type	Full Name
1	BLD	1	Ligand/Ion	BRASSINOLIDE
2	BMA	3	Ligand/Ion	BETA-D-MANNOSE
3	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:597 , TYR A:599 , LYS A:601 , TYR A:642 , SER A:647 , PRO A:648 , MET A:657 , ASN A:705 , TRP C:60 , PHE C:61 , HIS C:62	BINDING SITE FOR RESIDUE BLD A 801
02	AC2	SOFTWARE	TYR B:597 , LYS B:601 , TYR B:642 , SER B:647 , PRO B:648 , MET B:657 , PHE B:681 , ASN B:705 , ILE B:706 , THR B:729 , TRP D:60 , PHE D:61 , HIS D:62	BINDING SITE FOR RESIDUE BLD B 801
03	AC3	SOFTWARE	ASN A:112	BINDING SITE FOR MONO-SACCHARIDE NAG A 802 BOUND TO ASN A 112
04	AC4	SOFTWARE	SER A:130 , ASN A:154 , SER A:156 , ASP A:179	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 154 RESIDUES 803 TO 806
05	AC5	SOFTWARE	SER A:253 , ASN A:275 , SER A:277 , TYR A:295	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 275 RESIDUES 807 TO 808
06	AC6	SOFTWARE	ASN A:521 , ASN A:545 , GLU A:608 , HIS A:610 , SER A:630 , THR A:631 , ARG A:632 , PRO A:634	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 545 RESIDUES 809 TO 813
07	AC7	SOFTWARE	ASN A:551 , ASN A:573	BINDING SITE FOR MONO-SACCHARIDE NAG A 814 BOUND TO ASN A 573
08	AC8	SOFTWARE	ASN B:112 , GLY B:113	BINDING SITE FOR MONO-SACCHARIDE NAG B 802 BOUND TO ASN B 112
09	AC9	SOFTWARE	SER B:130 , PHE B:152 , ASN B:154 , SER B:156 , ASP B:179	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 154 RESIDUES 803 TO 806
10	BC1	SOFTWARE	SER B:253 , ASN B:275 , SER B:277 , TYR B:295	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 275 RESIDUES 807 TO 809
11	BC2	SOFTWARE	ASN B:521 , ASN B:545 , GLU B:608 , HIS B:610 , SER B:630 , THR B:631 , ARG B:632 , ASN B:633 , PRO B:634 , SER D:178	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 545 RESIDUES 810 TO 813
12	BC3	SOFTWARE	ASN B:573	BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 573 RESIDUES 814 TO 815
13	BC4	SOFTWARE	ASN C:104	BINDING SITE FOR MONO-SACCHARIDE NAG C1000 BOUND TO ASN C 104
14	BC5	SOFTWARE	LEU C:126 , ASN C:150 , ASN C:174 , ASN C:197	BINDING SITE FOR MONO-SACCHARIDE NAG C1001 BOUND TO ASN C 150
15	BC6	SOFTWARE	ASN D:150	BINDING SITE FOR MONO-SACCHARIDE NAG D1001 BOUND TO ASN D 150
16	BC7	SOFTWARE	ASN D:163	BINDING SITE FOR MONO-SACCHARIDE NAG D1002 BOUND TO ASN D 163

Asymmetric Unit

No.	Residues
1	A:62	-	A:69
2	A:120	-	A:147
3	A:199	-	A:221
4	A:244	-	A:268
5	A:315	-	A:339
6	A:411	-	A:439
7	A:609	-	A:635
8	A:763	-	A:770
9	B:120	-	B:147
10	B:199	-	B:221
11	B:244	-	B:268
12	B:315	-	B:339
13	B:411	-	B:439
14	B:609	-	B:635
15	B:763	-	B:770
16	C:58	-	C:65
17	C:202	-	C:210
18	D:58	-	D:65
19	D:202	-	D:210

Asymmetric Unit

No.	Residues
1	Ser A:639	-	Arg A:640
2	Tyr A:765	-	Pro A:766
3	Cys B:635	-	Asn B:636
4	Ser B:639	-	Arg B:640
5	Tyr B:765	-	Pro B:766

(no "SAP(SNP)/Variant" information available for 4LSX)

(no "PROSITE Motif" information available for 4LSX)

(no "Exon" information available for 4LSX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:740
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...............hhhhh..eeee..eeeeee........hhhhhhhhh.......eee....................eee........hhhhhhhhhhh....eee......................eee......eeehhhhhhh........eee....eee............eee....................eee.........hhhhhh......eee......ee...........eee....ee.....hhhhhhh....eee..........hhhhhhh....eee..........hhhhhh......eee..........hhhhhhhhhh..eee......ee...............eee....ee......hhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee...........hhhhhh....eee......ee..hhhhhhh....eee....ee.....hhhhh......hhhhh..eeeeee...........eeeee.....hhhhhhhh..........eeeee............eee..........hhhhhh.....eee..........hhhhhhh....eee......ee..hhhhhhh....eee....eeeee..........hhhhhh...eee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lsx A  31 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYEGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 770
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770

Chain B from PDB  Type:PROTEIN  Length:710
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eee........hhhhhhhhh.......eee....................eee........hhhhhhhhhhh....eee......................eee......eeehhhhhhhh.......eee....eee............eee....................eee.........hhhhhh......eee......ee...........eee....ee.....hhhhhhh....eee..........hhhhhh.....eee..........hhhhhh......eee..........hhhhhhhhhh..eee......eee..............eee....eee.....hhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee...........hhhhhh....eee..........hhhhhhh....eee..........hhhhhh.............eeeeee...........eeeee....hhhhhhhhh..........eeeee............eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee......eee..........hhhhh....eee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lsx B  31 SLYREIHQLISKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYEGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCD 771
                                    40||      81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771
                                     41|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                                      73

Chain C from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhee..............hhhhh..eee.....eeeee......ee..hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee......eee...hhhhhhhhhhhhh...eee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lsx C  27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCP 211
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206

Chain D from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhee..............hhhhh..eee.....eeeee......ee..hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh....eee..........hhhhhhh.....ee......eee...hhhhhhhhhhhh....eee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lsx D  27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGPVTSHPCP 211
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4LSX)

(no "CATH Domain" information available for 4LSX)

(no "Pfam Domain" information available for 4LSX)

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Asymmetric Unit
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	Cis Peptide Bonds
		Cys B:635 - Asn B:636	[ RasMol ]
		Ser A:639 - Arg A:640	[ RasMol ]
		Ser B:639 - Arg B:640	[ RasMol ]
		Tyr A:765 - Pro A:766	[ RasMol ]
		Tyr B:765 - Pro B:766	[ RasMol ]

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3riz	ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN IN ITS FREE FORM
3rj0	ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN BOUND TO BRASSINOLIDE
4lsa	ISOLATED STEROID RECEPTOR LIGAND BINDING DOMAIN MUTANT BOUND TO BRASSINOLIDE
4lsc	ISOLATED SERK1 CO-RECEPTOR ECTODOMAIN AT HIGH RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 33)

Sites (16, 16)

SS Bonds (19, 19)

Cis Peptide Bonds (5, 5)

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Gene Ontology (43, 60)

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