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(-) Description

Title :  STRUCTURE OF WT HUMAN GLUTATHIONE TRANSFERASE IN COMPLEX WITH CISPLATIN IN THE ABSENCE OF GLUTATHIONE.
 
Authors :  L. J. Parker
Date :  02 Sep 15  (Deposition) - 02 Nov 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Anticancer Cisplatin, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. J. Parker, L. C. Italiano, N. C. Hancock, J. Aitken, H. H. Harris, G. Hansen, D. B. Ascher, C. J. Morton, M. W. Parker, M. Lo Bello
Glutathione Transferase P1-1 Can Inactivate The Anti-Cancer Drug Cisplatin By A Novel Mechanism
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE P
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GSTP1, FAEES3, GST3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GST CLASS-PI,GSTP1-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PT3Ligand/IonPLATINUM (II) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:22 , TRP A:28 , GLU A:30 , GLU A:197 , HOH A:411binding site for residue MES A 301
2AC2SOFTWARECYS A:101 , PT A:303 , CYS B:101 , PT B:302binding site for residue PT A 302
3AC3SOFTWARECYS A:101 , PT A:302binding site for residue PT A 303
4AC4SOFTWAREALA B:22 , TRP B:28 , GLU B:30 , GLU B:197binding site for residue MES B 301
5AC5SOFTWAREPT A:302 , CYS B:101binding site for residue PT B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DJM)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:52 -Pro A:53
2Leu B:52 -Pro B:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DJM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DJM)

(-) Exons   (0, 0)

(no "Exon" information available for 5DJM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh....eeee...........eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5djm A   1 PPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVSCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                    10        20        30    ||  50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200         
                                                             35|                                                                                                                                                                   
                                                              46                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh...eeeee..........eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5djm B   2 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTWCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                    11        21        31  |||   52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       
                                                           34||                                                                                                                                                                  
                                                            38|                                                                                                                                                                  
                                                             47
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DJM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DJM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DJM)

(-) Gene Ontology  (63, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:52 - Pro A:53   [ RasMol ]  
    Leu B:52 - Pro B:53   [ RasMol ]  
 

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  GSTP1_HUMAN | P09211
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  2.5.1.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTP1_HUMAN | P09211: 10gs 11gs 12gs 13gs 14gs 16gs 17gs 18gs 19gs 1aqv 1aqw 1aqx 1eog 1eoh 1gss 1kbn 1lbk 1md3 1md4 1pgt 1px6 1px7 1zgn 20gs 22gs 2a2r 2a2s 2gss 2j9h 2pgt 3csh 3csi 3csj 3dd3 3dgq 3gss 3gus 3hjm 3hjo 3hkr 3ie3 3km6 3kmn 3kmo 3n9j 3pgt 4gss 4pgt 5dak 5dal 5dcg 5ddl 5djl 5gss 5j41 5jcw 5l6x 6gss 7gss 8gss 9gss

(-) Related Entries Specified in the PDB File

5dcg 5DCG CONTAINS THE APO VERSION OF THE PROTEIN
5djl 5DJL CONTAINS THE SAME PROTEIN IN COMPLEX WITH CISPLATIN AND GLUTATHIONE