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(-) Description

Title :  STRUCTURE OF WT HUMAN GLUTATHIONE TRANSFERASE IN COMPLEX WITH CISPLATIN IN THE PRESENCE OF GLUTATHIONE.
 
Authors :  L. J. Parker
Date :  02 Sep 15  (Deposition) - 02 Nov 16  (Release) - 02 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Anticancer Cisplatin Glutathione, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. J. Parker, L. C. Italiano, N. C. Hancock, J. Aitken, H. H. Harris, G. Hansen, D. B. Ascher, C. J. Morton, M. W. Parker, M. Lo Bello
Glutathione Transferase P1-1 Can Inactivate The Anti-Cancer Drug Cisplatin By A Novel Mechanism
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE P
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GSTP1, FAEES3, GST3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GST CLASS-PI,GSTP1-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 11)

Asymmetric/Biological Unit (6, 11)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CO31Ligand/IonCARBONATE ION
3GSH2Ligand/IonGLUTATHIONE
4MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5PT3Ligand/IonPLATINUM (II) ION
6SO41Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:22 , TRP A:28 , GLU A:197 , HOH A:408 , HOH A:441 , HOH A:444 , HOH A:525binding site for residue MES A 301
02AC2SOFTWARECYS A:101 , PT A:303 , HOH A:582 , HOH A:608 , CYS B:101 , PT B:306 , HOH B:618 , HOH B:644binding site for residue PT A 302
03AC3SOFTWARECYS A:101 , PT A:302 , HOH A:531 , HOH B:644binding site for residue PT A 303
04AC4SOFTWARETYR A:7 , PHE A:8 , ARG A:13 , TRP A:38 , LYS A:44 , GLN A:51 , LEU A:52 , GLN A:64 , SER A:65 , HOH A:433 , HOH A:480 , HOH A:537 , HOH A:596 , ASP B:98binding site for residue GSH A 304
05AC5SOFTWAREGLY B:77 , GLN B:147 , HOH B:525 , HOH B:533 , HOH B:538 , HOH B:543 , HOH B:595binding site for residue CA B 301
06AC6SOFTWAREASP A:171 , LYS B:29 , GLU B:30 , HOH B:494 , HOH B:558 , HOH B:584binding site for residue CA B 302
07AC7SOFTWAREPHE B:142 , GLN B:147 , ILE B:148 , ARG B:186 , HOH B:482binding site for residue CO3 B 303
08AC8SOFTWARESER B:27 , TRP B:28 , MES B:305binding site for residue SO4 B 304
09AC9SOFTWAREASP A:171 , ALA B:22 , TRP B:28 , GLU B:197 , SO4 B:304 , HOH B:478binding site for residue MES B 305
10AD1SOFTWAREPT A:302 , HOH A:608 , CYS B:101 , HOH B:552 , HOH B:566binding site for residue PT B 306
11AD2SOFTWAREASP A:98 , TYR B:7 , PHE B:8 , ARG B:13 , TRP B:38 , LYS B:44 , GLN B:51 , LEU B:52 , PRO B:53 , GLN B:64 , SER B:65 , HOH B:427 , HOH B:508 , HOH B:556binding site for residue GSH B 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DJL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Leu A:52 -Pro A:53
2Pro B:1 -Pro B:2
3Leu B:52 -Pro B:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DJL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DJL)

(-) Exons   (0, 0)

(no "Exon" information available for 5DJL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5djl A   0 MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh......eeee..eeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5djl B   1 PPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRCKYISLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DJL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DJL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DJL)

(-) Gene Ontology  (63, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:52 - Pro A:53   [ RasMol ]  
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  5djl
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  GSTP1_HUMAN | P09211
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  2.5.1.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTP1_HUMAN | P09211: 10gs 11gs 12gs 13gs 14gs 16gs 17gs 18gs 19gs 1aqv 1aqw 1aqx 1eog 1eoh 1gss 1kbn 1lbk 1md3 1md4 1pgt 1px6 1px7 1zgn 20gs 22gs 2a2r 2a2s 2gss 2j9h 2pgt 3csh 3csi 3csj 3dd3 3dgq 3gss 3gus 3hjm 3hjo 3hkr 3ie3 3km6 3kmn 3kmo 3n9j 3pgt 4gss 4pgt 5dak 5dal 5dcg 5ddl 5djm 5gss 5j41 5jcw 5l6x 6gss 7gss 8gss 9gss

(-) Related Entries Specified in the PDB File

5dcg 5DCG IS THE APO FORM OF WT GLUTATHIONE TRANSFERASE PI CLASS