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(-) Description

Title :  CRYSTAL STRUCTURE OF HGSTP1-1[V104] COMPLEXED WITH THE GSH CONJUGATE OF (+)-ANTI-BPDE
 
Authors :  X. Ji, J. Blaszczyk
Date :  22 Mar 99  (Deposition) - 01 Sep 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Pi Class, Hgstp1-1[V104], Detoxification (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, J. Blaszczyk, B. Xiao, R. O'Donnell, X. Hu, C. Herzog, S. V. Singh, P. Zimniak
Structure And Function Of Residue 104 And Water Molecules In The Xenobiotic Substrate-Binding Site In Human Glutathione S-Transferase P1-1.
Biochemistry V. 38 10231 1999
PubMed-ID: 10441116  |  Reference-DOI: 10.1021/BI990668U
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (GLUTATHIONE S-TRANSFERASE)
    Cellular Location: CYTOPLASM
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Gene: GTP_HUMAN
    Mutation: YES
    Organ: PLACENTA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: HGSTP1-1[V104] AND HGSTP1-1[I104] ARE NATURALLY OCCURRING VARIANTS OF HGSTP1-1 OBTAINED BY SITE- DIRECTED MUTAGENESIS
    Strain: BL21 (DE3) PLYSS
    Synonym: GST, HGSTP1-1[V104]

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2GBX2Ligand/Ion2-AMINO-4-[1-(CARBOXYMETHYL-CARBAMOYL)-2-(9-HYDROXY-7,8-DIOXO-7,8,9,10-TETRAHYDRO-BENZO[DEF]CHRYSEN-10-YLSULFANYL)-ETHYLCARBAMOYL]-BUTYRIC ACID
3MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:142 , GLN A:147 , ILE A:148 , ARG A:186 , HOH A:621 , HOH A:677BINDING SITE FOR RESIDUE SO4 A 210
2AC2SOFTWAREARG B:186BINDING SITE FOR RESIDUE SO4 B 210
3AC3SOFTWARETYR A:7 , PHE A:8 , ARG A:13 , TRP A:38 , LYS A:44 , GLN A:51 , LEU A:52 , PRO A:53 , GLN A:64 , SER A:65 , TYR A:108 , GLY A:205 , HOH A:310 , HOH A:317 , HOH A:383 , HOH A:426 , HOH A:589 , HOH A:703 , ASP B:98BINDING SITE FOR RESIDUE GBX A 211
4AC4SOFTWAREALA A:22 , TRP A:28 , GLU A:30 , PHE A:192 , GLU A:197 , HOH A:389 , HOH A:490 , HOH A:500 , ASP B:171BINDING SITE FOR RESIDUE MES A 212
5AC5SOFTWAREASP A:98 , TYR B:7 , PHE B:8 , VAL B:10 , ARG B:13 , TRP B:38 , LYS B:44 , GLY B:50 , GLN B:51 , LEU B:52 , PRO B:53 , GLN B:64 , SER B:65 , TYR B:108 , GLY B:205 , HOH B:307 , HOH B:326 , HOH B:476 , HOH B:681BINDING SITE FOR RESIDUE GBX B 211
6AC6SOFTWAREASP A:171 , ALA A:172 , ALA B:22 , TRP B:28 , GLU B:30 , GLU B:197 , HOH B:403 , HOH B:492 , HOH B:523BINDING SITE FOR RESIDUE MES B 212

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PGT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:52 -Pro A:53
2Leu B:52 -Pro B:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PGT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PGT)

(-) Exons   (0, 0)

(no "Exon" information available for 4PGT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:210
                                                                                                                                                                                                                                                  
               SCOP domains d4pgta2 A:0-76 Class pi GST                                                  d4pgta1 A:77-209 Class pi GST                                                                                                         SCOP domains
               CATH domains --4pgtA01 A:2-78,A:187-208 Glutaredoxin                                        4pgtA02 A:79-186  [code=1.20.1050.10, no name defined]                                                      4pgtA01 Glutaredoxin  - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhh.....eeeee.hhhhhh.hhhhh.......eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhh..........hhhhhhhhhhhhhhhh...hhhh.hhhhhhhhhhhh.hhhhhhh..hhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pgt A   0 MPPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRcKYVSLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                     9        19        29        39        49        59        69        79        89        99 |     109       119       129       139       149       159       169       179       189       199       209
                                                                                                                               101-CSO                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                 
               SCOP domains d4pgtb2 B:1-76 Class pi GST                                                 d4pgtb1 B:77-209 Class pi GST                                                                                                         SCOP domains
               CATH domains -4pgtB01 B:2-78,B:187-208 Glutaredoxin                                        4pgtB02 B:79-186  [code=1.20.1050.10, no name defined]                                                      4pgtB01 Glutaredoxin  - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhh....eeeeee.hhhhhh.hhhhh.......eeee..eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhh..........hhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhhhh.hhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pgt B   1 PPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLYGKDQQEAALVDMVNDGVEDLRcKYVSLIYTNYEAGKDDYVKALPGQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLLLIHEVLAPGCLDAFPLLSAYVGRLSARPKLKAFLASPEYVNLPINGNGKQ 209
                                    10        20        30        40        50        60        70        80        90       100|      110       120       130       140       150       160       170       180       190       200         
                                                                                                                              101-CSO
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PGT)

(-) Gene Ontology  (63, 63)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:52 - Pro A:53   [ RasMol ]  
    Leu B:52 - Pro B:53   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GSTP1_HUMAN | P09211: 10gs 11gs 12gs 13gs 14gs 16gs 17gs 18gs 19gs 1aqv 1aqw 1aqx 1eog 1eoh 1gss 1kbn 1lbk 1md3 1md4 1pgt 1px6 1px7 1zgn 20gs 22gs 2a2r 2a2s 2gss 2j9h 2pgt 3csh 3csi 3csj 3dd3 3dgq 3gss 3gus 3hjm 3hjo 3hkr 3ie3 3km6 3kmn 3kmo 3n9j 3pgt 4gss 5dak 5dal 5dcg 5ddl 5djl 5djm 5gss 5j41 5jcw 5l6x 6gss 7gss 8gss 9gss

(-) Related Entries Specified in the PDB File

1pgt 2pgt 3pgt