4H5R - JenaLib

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Title :   HSC70 NBD WITH NA, CL AND GLYCEROL

Authors :   B. Stec

Date :   18 Sep 12 (Deposition) - 19 Mar 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.64

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Hsc70 Nbd Domain, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Zhang, J. Cellitti, P. Teriete, M. Pellecchia, B. Stec
New Crystal Structures Of Hsc-70 Atp Binding Domain Confirm The Role Of Individual Binding Pockets And Suggest A New Method Of Inhibition.
Biochimie V. 108 186 2015
PubMed-ID: 25433210 | Reference-DOI: 10.1016/J.BIOCHI.2014.11.012

Molecule 1 - HEAT SHOCK COGNATE 71 KDA PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Gene	:	HSC70, HSP73, HSPA10, HSPA8
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HEAT SHOCK 70 KDA PROTEIN 8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 18)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	NA	2	Ligand/Ion	SODIUM ION
4	PO4	7	Ligand/Ion	PHOSPHATE ION
5	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	5	Ligand/Ion	PHOSPHATE ION
5	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	2	Ligand/Ion	PHOSPHATE ION
5	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	7	Ligand/Ion	PHOSPHATE ION
5	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PO4 A:402 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:504 , HOH A:505	BINDING SITE FOR RESIDUE NA A 401
02	AC2	SOFTWARE	GLY A:12 , THR A:13 , LYS A:71 , GLU A:175 , THR A:204 , NA A:401 , HOH A:501 , HOH A:502 , HOH A:505 , HOH A:523 , HOH A:606 , HOH A:633	BINDING SITE FOR RESIDUE PO4 A 402
03	AC3	SOFTWARE	THR A:14 , TYR A:15 , HOH A:505 , HOH A:523	BINDING SITE FOR RESIDUE CL A 403
04	AC4	SOFTWARE	ARG A:77 , ARG A:100 , ILE A:297 , THR A:298 , ARG A:301 , HOH A:689 , HOH A:695 , HOH A:702	BINDING SITE FOR RESIDUE PO4 A 404
05	AC5	SOFTWARE	GLU A:255 , ASN A:256 , TYR A:288 , HOH A:573	BINDING SITE FOR RESIDUE PO4 A 405
06	AC6	SOFTWARE	GLN A:156 , LYS A:159 , ARG A:247 , HOH A:832 , HOH A:836	BINDING SITE FOR RESIDUE PO4 A 406
07	AC7	SOFTWARE	LYS A:159 , ARG A:171 , ILE A:172 , HOH A:732 , HOH A:770	BINDING SITE FOR RESIDUE PO4 A 407
08	AC8	SOFTWARE	GLY A:224 , ASP A:225 , THR A:226	BINDING SITE FOR RESIDUE SO4 A 408
09	AC9	SOFTWARE	THR A:13 , LYS A:71 , ARG A:76 , TYR A:149 , PHE A:150 , GLN A:154 , THR A:204 , THR A:226 , HOH A:674 , HOH A:851	BINDING SITE FOR RESIDUE GOL A 409
10	BC1	SOFTWARE	ASN A:151 , ASP A:152 , LYS A:248 , HOH A:547	BINDING SITE FOR RESIDUE GOL A 410
11	BC2	SOFTWARE	PO4 B:402 , HOH B:501 , HOH B:502 , HOH B:503 , HOH B:504	BINDING SITE FOR RESIDUE NA B 401
12	BC3	SOFTWARE	GLY B:12 , THR B:13 , LYS B:71 , PRO B:147 , GLU B:175 , THR B:204 , NA B:401 , HOH B:501 , HOH B:502 , HOH B:640 , HOH B:641	BINDING SITE FOR RESIDUE PO4 B 402
13	BC4	SOFTWARE	THR B:14 , TYR B:15 , HOH B:505	BINDING SITE FOR RESIDUE CL B 403
14	BC5	SOFTWARE	ARG B:77 , ARG B:100 , ILE B:297 , THR B:298 , ARG B:301 , HOH B:603 , HOH B:669 , HOH B:670 , HOH B:881	BINDING SITE FOR RESIDUE PO4 B 404
15	BC6	SOFTWARE	GLY B:224 , ASP B:225 , THR B:226	BINDING SITE FOR RESIDUE SO4 B 405
16	BC7	SOFTWARE	GLU B:255 , ASN B:256 , TYR B:288 , HOH B:582	BINDING SITE FOR RESIDUE SO4 B 406
17	BC8	SOFTWARE	ARG B:262 , HOH B:579 , HOH B:621 , HOH B:635	BINDING SITE FOR RESIDUE GOL B 407
18	BC9	SOFTWARE	THR B:13 , LYS B:71 , ARG B:72 , ARG B:76 , TYR B:149 , PHE B:150 , GLN B:154 , HOH B:702 , HOH B:710	BINDING SITE FOR RESIDUE GOL B 408

(no "SS Bond" information available for 4H5R)

(no "Cis Peptide Bond" information available for 4H5R)

(no "SAP(SNP)/Variant" information available for 4H5R)

(no "PROSITE Motif" information available for 4H5R)

(no "Exon" information available for 4H5R)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4h5ra1 A:3-188 automated matches                                                                                                                                                         d4h5ra2 A:189-384 automated matches                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhh...hhh.ee.hhhhhh.....hhhhhhhhhhh..eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh....eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h5r A   3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Chain B from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4h5rb1 B:3-188 automated matches                                                                                                                                                         d4h5rb2 B:189-384 automated matches                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhhhhhhhh.ee.hhhhhh.....hhhhhhhhhhh..eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.........eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h5r B   3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: Actin/HSP70 (199)

Protein domain: automated matches (47)

Human (Homo sapiens) [TaxId: 9606] (14)

1a	d4h5ra1	A:3-188
1b	d4h5ra2	A:189-384
1c	d4h5rb1	B:3-188
1d	d4h5rb2	B:189-384

(no "CATH Domain" information available for 4H5R)

(no "Pfam Domain" information available for 4H5R)

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Asymmetric Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 4)

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Gene Ontology (67, 67)

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