4H5N - JenaLib

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Title :   HSC70 NBD WITH PO4, NA, CL

Authors :   B. Stec

Date :   18 Sep 12 (Deposition) - 19 Mar 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Nucleotide Binding Domain, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Z. Zhang, J. Cellitti, P. Teriete, M. Pellecchia, B. Stec
New Crystal Structures Of Hsc-70 Atp Binding Domain Confirm The Role Of Individual Binding Pockets And Suggest A New Method Of Inhibition.
Biochimie V. 108 186 2015
PubMed-ID: 25433210 | Reference-DOI: 10.1016/J.BIOCHI.2014.11.012

Molecule 1 - HEAT SHOCK COGNATE 71 KDA PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Gene	:	HSC70, HSP73, HSPA10, HSPA8
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HEAT SHOCK 70 KDA PROTEIN 8

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	NA	2	Ligand/Ion	SODIUM ION
4	PO4	11	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	5	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	6	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (2, 15)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PO4	11	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:12 , THR A:13 , LYS A:71 , PRO A:147 , GLU A:175 , THR A:204 , HOH A:603 , HOH A:624 , HOH A:681 , HOH A:710	BINDING SITE FOR RESIDUE PO4 A 401
02	AC2	SOFTWARE	ARG A:77 , ARG A:100 , ILE A:297 , THR A:298 , ARG A:301 , HOH A:612 , HOH A:707 , HOH A:737 , HOH A:796	BINDING SITE FOR RESIDUE PO4 A 402
03	AC3	SOFTWARE	GLN A:156 , LYS A:159 , ARG A:247 , HOH A:589 , HOH A:831	BINDING SITE FOR RESIDUE PO4 A 403
04	AC4	SOFTWARE	LYS A:159 , ARG A:171 , ILE A:172 , HOH A:791 , HOH A:834	BINDING SITE FOR RESIDUE PO4 A 404
05	AC5	SOFTWARE	GLU A:255 , ASN A:256 , TYR A:288 , HOH A:549	BINDING SITE FOR RESIDUE PO4 A 405
06	AC6	SOFTWARE	THR A:13 , THR A:14 , TYR A:15 , HOH A:756	BINDING SITE FOR RESIDUE CL A 406
07	AC7	SOFTWARE	ASP A:366	BINDING SITE FOR RESIDUE NA A 407
08	AC8	SOFTWARE	LYS A:271 , ARG A:272 , SER A:275 , GLY A:339 , ARG A:342 , ASP A:366 , HOH A:635	BINDING SITE FOR RESIDUE GOL A 408
09	AC9	SOFTWARE	ARG A:262 , THR A:265 , HOH A:599 , HOH A:717 , HOH A:817 , HOH A:887 , HOH A:903 , GOL B:409	BINDING SITE FOR RESIDUE GOL A 409
10	BC1	SOFTWARE	GLY B:12 , THR B:13 , LYS B:71 , PRO B:147 , GLU B:175 , THR B:204 , HOH B:611 , HOH B:632 , HOH B:739 , HOH B:751	BINDING SITE FOR RESIDUE PO4 B 401
11	BC2	SOFTWARE	ARG B:77 , ARG B:100 , ILE B:297 , THR B:298 , ARG B:301 , HOH B:608 , HOH B:658 , HOH B:759 , HOH B:846	BINDING SITE FOR RESIDUE PO4 B 402
12	BC3	SOFTWARE	GLN B:156 , LYS B:159 , HOH B:690 , HOH B:782	BINDING SITE FOR RESIDUE PO4 B 403
13	BC4	SOFTWARE	LYS B:159 , ARG B:171 , ILE B:172 , HOH B:827	BINDING SITE FOR RESIDUE PO4 B 404
14	BC5	SOFTWARE	GLU B:27 , ILE B:28 , ARG B:36 , HOH B:833 , HOH B:840	BINDING SITE FOR RESIDUE PO4 B 405
15	BC6	SOFTWARE	GLU B:255 , ASN B:256 , TYR B:288 , HOH B:575 , HOH B:823	BINDING SITE FOR RESIDUE PO4 B 406
16	BC7	SOFTWARE	THR B:14 , TYR B:15	BINDING SITE FOR RESIDUE CL B 407
17	BC8	SOFTWARE	ASP B:366	BINDING SITE FOR RESIDUE NA B 408
18	BC9	SOFTWARE	GOL A:409 , ARG B:262 , THR B:265 , HOH B:572 , HOH B:657	BINDING SITE FOR RESIDUE GOL B 409
19	CC1	SOFTWARE	ASN B:151 , ASP B:152 , SER B:153 , HOH B:587 , HOH B:844 , HOH B:899	BINDING SITE FOR RESIDUE GOL B 410

(no "SS Bond" information available for 4H5N)

(no "Cis Peptide Bond" information available for 4H5N)

(no "SAP(SNP)/Variant" information available for 4H5N)

(no "PROSITE Motif" information available for 4H5N)

(no "Exon" information available for 4H5N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4h5na1 A:3-188 automated matches                                                                                                                                                         d4h5na2 A:189-384 automated matches                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeeeeee..eeee.........ee..eee....eeehhhhhhh...hhh.ee.hhhhh......hhhhhhhhh....eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.........eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh...eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h5n A   3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Chain B from PDB  Type:PROTEIN  Length:382
                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4h5nb1 B:3-188 automated matches                                                                                                                                                         d4h5nb2 B:189-384 automated matches                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee....eeeeeeee..eeee.........ee..eee....eeehhhhhhh...hhh.ee.hhhhhh.....hhhhhhhhh....eeeee..eeeeeeee..eeeeehhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhh..eeeeeeehhhhhhhhh.........eeeeeeee....eeeeeeeee..eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeee..eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeehhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h5n B   3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDK 384
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: Actin/HSP70 (199)

Protein domain: automated matches (47)

Human (Homo sapiens) [TaxId: 9606] (14)

1a	d4h5na1	A:3-188
1b	d4h5na2	A:189-384
1c	d4h5nb1	B:3-188
1d	d4h5nb2	B:189-384

(no "CATH Domain" information available for 4H5N)

(no "Pfam Domain" information available for 4H5N)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 4)

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Gene Ontology (67, 67)

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