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(-) Description

Title :  CRYSTAL STRUCTURE OF FGF RECEPTOR (FGFR) 4 KINASE HARBORING THE V550L GATE-KEEPER MUTATION IN COMPLEX WITH FIIN-3, AN IRREVERSIBLE TYROSINE KINASE INHIBITOR CAPABLE OF OVERCOMING FGFR KINASE GATE-KEEPER MUTATIONS
 
Authors :  Z. Huang, M. Mohammadi
Date :  26 Aug 14  (Deposition) - 29 Oct 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Domain Fold, Cell Signaling, Phosphotransferase, Plasmamembrane, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Tan, J. Wang, J. Tanizaki, Z. Huang, A. R. Aref, M. Rusan, S. J. Zhu, Y. Zhang, D. Ercan, R. G. Liao, M. Capelletti, W. Zhou, W. Hur, N. Kim, T. Sim, S. Gaudet, D. A. Barbie, J. R. Yeh, C. H. Yun, P. S. Hammerman, M. Mohammadi, P. A. Janne, N. S. Gray
Development Of Covalent Inhibitors That Can Overcome Resistance To First-Generation Fgfr Kinase Inhibitors.
Proc. Natl. Acad. Sci. Usa V. 111 E4869 2014
PubMed-ID: 25349422  |  Reference-DOI: 10.1073/PNAS.1403438111

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TYROSINE KINASE DOMAIN OF FGF RECEPTOR 4
    Gene: FGFR4, JTK2, TKF
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1FI31Ligand/IonN-[4-({[(2,6-DICHLORO-3,5-DIMETHOXYPHENYL)CARBAMOYL](6-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)AMINO}METHYL)PHENYL]PROPANAMIDE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:473 , GLU A:475 , GLY A:476 , CYS A:477 , PHE A:478 , LYS A:503 , GLU A:520 , ILE A:534 , LEU A:550 , GLU A:551 , CYS A:552 , ALA A:553 , GLY A:556 , GLU A:560 , LEU A:619 , ALA A:629 , ASP A:630 , PHE A:631 , LEU A:633BINDING SITE FOR RESIDUE FI3 A 801
2AC2SOFTWAREARG A:563 , ARG A:566 , GLY A:687 , SER A:688 , HOH A:930BINDING SITE FOR RESIDUE SO4 A 802
3AC3SOFTWAREARG A:559 , ARG A:563 , HOH A:941BINDING SITE FOR RESIDUE SO4 A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4R6V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R6V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R6V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R6V)

(-) Exons   (0, 0)

(no "Exon" information available for 4R6V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.............hhh.eeeeee.......eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4r6v A 443 DPLLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVILECAAKGNLREFLRARRPPGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLAPVKWMAPEALFDEVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV 750
                                   452       462       472       482      |497       507       517       527       537       547       557       567||     590       600       610       620       630   ||  657       667       677       687       697       707       717       727       737       747   
                                                                        489|                                                                      568|                                                 634|                                                                                                  
                                                                         495                                                                       582                                                  652
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R6V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R6V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R6V)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  FGFR4_HUMAN | P22455
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P22455: 1qct 4qq5 4qqc 4qqj 4qqt 4qrc 4tye 4tyg 4tyi 4tyj 4uxq 4xcu 5jkg

(-) Related Entries Specified in the PDB File

4qq5 4qqc 4qqj 4qqt 4qrc