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(-) Description

Title :  STRUCTURAL ANALYSIS OF THE HUMAN FIBROBLAST GROWTH FACTOR RECEPTOR 4 KINASE
 
Authors :  E. Lesca, A. Lammens, R. Huber, M. Augustin
Date :  08 Jul 14  (Deposition) - 24 Sep 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Fibroblast Growth Factor Receptor, Kinase, Transferase, Dovitinib, Ponatinb, Proteros Biostructures Gmbh (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lesca, A. Lammens, R. Huber, M. Augustin
Structural Analysis Of The Human Fibroblast Growth Factor Receptor 4 Kinase.
J. Mol. Biol. V. 426 3744 2014
PubMed-ID: 25219510  |  Reference-DOI: 10.1016/J.JMB.2014.09.004

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC HTB
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 447-753
    Gene: FGFR4, JTK2, TKF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
10LI1Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:501 , LYS A:503 , GLU A:520 , MET A:524 , ILE A:527 , ILE A:533 , VAL A:550 , GLU A:551 , ALA A:553 , CYS A:608 , ILE A:609 , HIS A:610 , LEU A:619 , ILE A:628 , ALA A:629 , ASP A:630 , PHE A:631binding site for residue 0LI A 801
2AC2SOFTWARELYS A:531 , ASN A:535 , GLU A:551 , LYS A:627 , HOH A:956binding site for residue EDO A 802
3AC3SOFTWAREGLU A:461 , PHE A:462 , ARG A:464 , CYS A:540 , GLN A:542 , GLU A:543binding site for residue PO4 A 803
4AC4SOFTWAREARG A:707 , ARG A:723 , TRP A:726 , HIS A:727 , HOH A:923 , HOH A:930binding site for residue PO4 A 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TYJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TYJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TYJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TYJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4TYJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh.........hhh.eeeeeeee...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tyj A 444 MGSAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAVSEE 753
                                   453       463       473  ||   485       495       505       515       525       535       545       555       565  ||   590       600       610       620       630    || 655       665       675       685       695       705       715       725       735       745        
                                                          476|                                                                                      568|                                                635|                                                                                                      
                                                           479                                                                                       584                                                 651
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TYJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TYJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TYJ)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  FGFR4_HUMAN | P22455
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P22455: 1qct 4qq5 4qqc 4qqj 4qqt 4qrc 4r6v 4tye 4tyg 4tyi 4uxq 4xcu 5jkg

(-) Related Entries Specified in the PDB File

4tye FGFR4 - APO-1-STRUCTURE
4tyg FGFR4 - APO-2-STRUCTURE
4tyi FGFR4 - DOVITINIB-STRUCTURE