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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYROSINE KINASE DOMAIN OF FGF RECEPTOR 4 IN COMPLEX WITH PONATINIB
 
Authors :  Z. Huang, M. Mohammadi
Date :  30 Jun 14  (Deposition) - 29 Oct 14  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Domain Fold, Cell Signaling, Phosphotransferase, Plasmamembrane, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Huang, L. Tan, H. Wang, Y. Liu, S. Blais, J. Deng, T. A. Neubert, N. S. Gray, X. Li, M. Mohammadi
Dfg-Out Mode Of Inhibition By An Irreversible Type-1 Inhibitor Capable Of Overcoming Gate-Keeper Mutations In Fg Receptors.
Acs Chem. Biol. V. 10 299 2015
PubMed-ID: 25317566  |  Reference-DOI: 10.1021/CB500674S

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: TYROSINE KINASE DOMAIN OF FGF RECEPTOR 4
    Gene: FGFR4, JTK2, TKF
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
10LI1Ligand/Ion3-(IMIDAZO[1,2-B]PYRIDAZIN-3-YLETHYNYL)-4-METHYL-N-{4-[(4-METHYLPIPERAZIN-1-YL)METHYL]-3-(TRIFLUOROMETHYL)PHENYL}BENZAMIDE
2SO44Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:616 , THR A:646 , ASN A:648 , ARG A:650 , HOH A:945 , HOH A:946 , HOH A:974BINDING SITE FOR RESIDUE SO4 A 801
2AC2SOFTWAREVAL A:481 , ALA A:501 , VAL A:502 , LYS A:503 , GLU A:520 , MET A:524 , VAL A:550 , GLU A:551 , CYS A:552 , ALA A:553 , LEU A:603 , CYS A:608 , ILE A:609 , HIS A:610 , ARG A:611 , LEU A:619 , ILE A:628 , ALA A:629 , ASP A:630 , PHE A:631 , LEU A:633BINDING SITE FOR RESIDUE 0LI A 802
3AC3SOFTWAREARG A:563 , ARG A:566 , SER A:688BINDING SITE FOR RESIDUE SO4 A 803
4AC4SOFTWARELYS A:555 , GLU A:622 , ASP A:623 , ASN A:624BINDING SITE FOR RESIDUE SO4 A 804
5AC5SOFTWAREARG A:707 , TRP A:726 , HIS A:727 , ALA A:728 , HOH A:938 , HOH A:989BINDING SITE FOR RESIDUE SO4 A 805

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QRC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asp A:630 -Phe A:631

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QRC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QRC)

(-) Exons   (0, 0)

(no "Exon" information available for 4QRC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeeeee..eeeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......................hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qrc A 454 LPLDPLWEFPRDRLVLGKPLGEGAFGQVVRAEAFGMDPARPDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVIVECAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDEVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV 750
                                   463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QRC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QRC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QRC)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:630 - Phe A:631   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P22455: 1qct 4qq5 4qqc 4qqj 4qqt 4r6v 4tye 4tyg 4tyi 4tyj 4uxq 4xcu 5jkg

(-) Related Entries Specified in the PDB File

4qq5 4qqc 4qqj 4qqt