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(-) Description

Title :  CRYSTAL STRUCTURE OF FGF RECEPTOR (FGFR) 4 KINASE HARBORING THE V550L GATE-KEEPER MUTATION IN COMPLEX WITH FIIN-2, AN IRREVERSIBLE TYROSINE KINASE INHIBITOR CAPABLE OF OVERCOMING FGFR KINASE GATE-KEEPER MUTATIONS
 
Authors :  Z. Huang, M. Mohammadi
Date :  26 Jun 14  (Deposition) - 29 Oct 14  (Release) - 28 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Kinase Domain Fold, Cell Signaling, Phosphotransferase, Plasmamembrane, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Huang, L. Tan, H. Wang, Y. Liu, S. Blais, J. Deng, T. A. Neubert, N. S. Gray, X. Li, M. Mohammadi
Dfg-Out Mode Of Inhibition By An Irreversible Type-1 Inhibitor Capable Of Overcoming Gate-Keeper Mutations In Fg Receptors.
Acs Chem. Biol. V. 10 299 2015
PubMed-ID: 25317566  |  Reference-DOI: 10.1021/CB500674S

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 4
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN OF FGF RECEPTOR 4
    Gene: FGFR4, JTK2, TKF
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
137O1Ligand/IonN-(4-{[3-(3,5-DIMETHOXYPHENYL)-7-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-2-OXO-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-1(2H)-YL]METHYL}PHENYL)PROPANAMIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
137O1Ligand/IonN-(4-{[3-(3,5-DIMETHOXYPHENYL)-7-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-2-OXO-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-1(2H)-YL]METHYL}PHENYL)PROPANAMIDE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
137O3Ligand/IonN-(4-{[3-(3,5-DIMETHOXYPHENYL)-7-{[4-(4-METHYLPIPERAZIN-1-YL)PHENYL]AMINO}-2-OXO-3,4-DIHYDROPYRIMIDO[4,5-D]PYRIMIDIN-1(2H)-YL]METHYL}PHENYL)PROPANAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:478 , GLU A:480 , GLY A:481 , CYS A:482 , PHE A:483 , LYS A:508 , GLU A:525 , LEU A:555 , GLU A:556 , ALA A:558 , ALA A:559 , GLY A:561 , LEU A:624 , ALA A:634 , ASP A:635 , PHE A:636BINDING SITE FOR RESIDUE 37O A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4QQ5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:447 -Asp A:448

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4QQ5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4QQ5)

(-) Exons   (0, 0)

(no "Exon" information available for 4QQ5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.............hhh.eeeeee.......eeeeeeee....eeeeeeee.....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4qq5 A 447 QDPLLAGLVSLDLPLDPLWEFPRDRLVLGKPLGEGCFGQVVRAEAFGMDQASTVAVKMLKDNASDKDLADLVSEMEVMKLIGRHKNIINLLGVCTQEGPLYVILECAAKGNLREFLRARRPPGPLSFPVLVSCAYQVARGMQYLESRKCIHRDLAARNVLVTEDNVMKIADFGLALPVKWMAPEALFDEVYTHQSDVWSFGILLWEIFTLGGSPYPGIPVEELFSLLREGHRMDRPPHCPPELYGLMRECWHAAPSQRPTFKQLVEALDKVLLAV 755
                                   456       466       476       486       501       511       521       531       541       551       561       571 ||    594       604       614       624       634    || 660       670       680       690       700       710       720       730       740       750     
                                                                         494|                                                                      573|                                                 639|                                                                                                   
                                                                          500                                                                       587                                                  656
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4QQ5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4QQ5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4QQ5)

(-) Gene Ontology  (51, 51)

Asymmetric Unit(hide GO term definitions)

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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR4_HUMAN | P22455: 1qct 4qqc 4qqj 4qqt 4qrc 4r6v 4tye 4tyg 4tyi 4tyj 4uxq 4xcu 5jkg

(-) Related Entries Specified in the PDB File

4qqc 4qqj 4qqt 4qrc