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(-) Description

Title :  CRYSTAL STRUCTURE OF HISTONE ACETYLTRANSFERASE COMPLEX
 
Authors :  M. Yang, Y. Li
Date :  08 Mar 14  (Deposition) - 09 Jul 14  (Release) - 09 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.51
Chains :  Asym. Unit :  A,B,C,D,E,F,P,Y
Biol. Unit 1:  A,B,C,Y  (1x)
Biol. Unit 2:  D,E,F,P  (1x)
Keywords :  Hat Wd40, Acetyltransferase, Accoa, Phosphorylation, Histone- Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Li, L. Zhang, T. Liu, C. Chai, Q. Fang, H. Wu, P. A. Agudelo Garcia, Z. Han, S. Zong, Y. Yu, X. Zhang, M. R. Parthun, J. Chai, R. M. Xu, M. Yang
Hat2P Recognizes The Histone H3 Tail To Specify The Acetylation Of The Newly Synthesized H3/H4 Heterodimer By The Hat1P/Hat2P Complex
Genes Dev. V. 28 1217 2014
PubMed-ID: 24835250  |  Reference-DOI: 10.1101/GAD.240531.114

(-) Compounds

Molecule 1 - HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT
    Chains: A, D
    EC Number: 2.3.1.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 7-319
    Gene: HAT1, LPA16W, YP8132.12, YPL001W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - HISTONE ACETYLTRANSFERASE TYPE B SUBUNIT 2
    Chains: B, E
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 8-389
    Gene: HAT2, YEL056W
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 3 - HISTONE H4
    Chains: C, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-49
    Gene: HHF1, YBR009C, YBR0122, HHF2, YNL030W, N2752
    Mutation: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 4 - HISTONE H3
    Chains: Y, P
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 2-16
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE S288C
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFPY
Biological Unit 1 (1x): ABC    Y
Biological Unit 2 (1x):    DEFP 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2SO4-1Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:160 , ILE A:161 , PHE A:220 , ILE A:222 , GLN A:227 , ASN A:228 , LYS A:229 , GLY A:230 , GLY A:232 , SER A:233 , ASN A:258 , HOH A:565 , HOH A:594 , HOH A:596 , LYS C:12 , HOH C:118BINDING SITE FOR RESIDUE COA A 401
2AC2SOFTWAREGLN B:41 , ARG B:123 , ARG B:125 , SER B:167 , PHE B:168 , HOH B:610BINDING SITE FOR RESIDUE SO4 B 501
3AC3SOFTWAREILE D:161 , PHE D:220 , LEU D:221 , ILE D:222 , TYR D:226 , GLN D:227 , ASN D:228 , GLY D:230 , GLY D:232 , SER D:233 , ASN D:258 , LEU D:264 , ARG D:267 , HOH D:530 , HOH D:540 , HOH D:595 , HOH D:598 , LYS F:12 , HOH F:113BINDING SITE FOR RESIDUE COA D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PSX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly F:28 -Ile F:29

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PSX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PSX)

(-) Exons   (0, 0)

(no "Exon" information available for 4PSX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeehhhheeeeee...eeee....hhhhhh...eee.ee..eeeeeee.....eeeeee..ee.......hhhhhhhh.......ee.hhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhh.............eeeeeee.....eeeeeeeeeee...hhhhhhhh....eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4psx A   7 KPETWTSSANEALRVSIVGENAVQFSPLFTYPIYGDSEKIYGYKDLIIHLAFDSVTFKPYVNVKYSAKLGDDNIVDVEKKLLSFLPKDDVIVRDEAKWVDCFAEERKTHNLSDVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDPSWQIYWLLNKKTKELIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDLRDRNDIQRLRKLGYDAVFQKHSDLSDEFLESSRKSLKLEERQFNRLVEMLLLLNN 319
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316   


Chain B from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhheeeeeeee.......eee.....eee...eeeeeeee.........eeeeeeeeeee.hhh..eeeeeeeee...eeeeeee..eeeeeeeee....eeeee...eeeeee........eeee......eeeee.....eeeee...........eee.......eeeeee......eeeeee...eeeeee......eeeeee....eeeeee......eeeeee....eeeee........eee......eeeeee......eeeeee....eeeee.hhh...............eeeee......eeeeee......eeeeee...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4psx B   8 LSVDEEYDLWKSNVPLMYDFVSETRLTWPSLTVQWLPTPVQELDGGFIKQELIIGTHTSGEEENYLKFAEINLPKEILSNIRITAKYEHEEEITRARYMPQDPNIVATINGQGTTFLYSRSEGLQSTLKFHKDNGYALSFSTLVKGRLLSGSDDHTVALWEVGSGGDPTKPVRTWNDLHSDIINDNKWHNFNKDLFGTVSEDSLLKINDVRANNTTIDTVKCPQPFNTLAFSHHSSNLLAAAGMDSYVYLYDLRNMKEPLHHMSGHEDAVNNLEFSTHVDGVVVSSGSDNRLMMWDLKQIGAEQTPDDAEDGVPELIMVHAGHRSSVNDFDLNPQIPWLVASAEEENILQVWKCSHSLPIV 389
                                    17        27        37        47        57        67        77       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388 
                                                                                                        85|                                                                                                                                                                                                                                                                                          
                                                                                                        107                                                                                                                                                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:39
                                                                       
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                 4psx C   7 GKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKR  45
                                    16        26        36         


Chain D from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eeehhhheeeeee...eeee....hhhhhh...eee.ee..eeeeeee.....eeeeee..ee.......hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeee..hhhhhhhhhhhhhhhhhhh.............eeeeeee.....eeeeeeeeeee...hhhhhhhh....eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4psx D   7 KPETWTSSANEALRVSIVGENAVQFSPLFTYPIYGDSEKIYGYKDLIIHLAFDSVTFKPYVNVKYSAKLGDDNIVDVEKKLLSFLPKDDVIVRDEAKWVDCFAEERKTHNLSDVFEKVSEYSLNGEEFVVYKSSLVDDFARRMHRRVQIFSLLFIEAANYIDETDPSWQIYWLLNKKTKELIGFVTTYKYWHYLGAKSFDEDIDKKFRAKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKSITEITVEDPNEAFDDLRDRNDIQRLRKLGYDAVFQKHSDLSDEFLESSRKSLKLEERQFNRLVEMLLLLNN 319
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316   


Chain E from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhheeeeeeee.......eee.....ee....eeeeeeee.........eeeeeeeeeee.hhhh.eeeeeeeee...eeeeeee..eeeeeeeee....eeeee...eeeeee........eeee......eeeee.....eeeee...........eee.......eeeeee......eeeeee...eeeeee......eeeeee....eeeeee......eeeeee....eeeee........eee......eeeeee......eeeeee....eeeee.hhh....hhhhhh.....eeeee......eeeeee......eeeeee...eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4psx E   8 LSVDEEYDLWKSNVPLMYDFVSETRLTWPSLTVQWLPTPVQELDGGFIKQELIIGTHTSGEEENYLKFAEINLPKEILSNIRITAKYEHEEEITRARYMPQDPNIVATINGQGTTFLYSRSEGLQSTLKFHKDNGYALSFSTLVKGRLLSGSDDHTVALWEVGSGGDPTKPVRTWNDLHSDIINDNKWHNFNKDLFGTVSEDSLLKINDVRANNTTIDTVKCPQPFNTLAFSHHSSNLLAAAGMDSYVYLYDLRNMKEPLHHMSGHEDAVNNLEFSTHVDGVVVSSGSDNRLMMWDLKQIGAEQTPDDAEDGVPELIMVHAGHRSSVNDFDLNPQIPWLVASAEEENILQVWKCSHSLPIV 389
                                    17        27        37        47        57        67        77       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388 
                                                                                                         86|                                                                                                                                                                                                                                                                                         
                                                                                                         108                                                                                                                                                                                                                                                                                         


Chain F from PDB  Type:PROTEIN  Length:37
                                                                     
               SCOP domains ------------------------------------- SCOP domains
               CATH domains ------------------------------------- CATH domains
               Pfam domains ------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------- PROSITE
                 Transcript ------------------------------------- Transcript
                 4psx F   7 GKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV  43
                                    16        26        36       


Chain P from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 4psx P   1 ARTKQTARKS  10
                                    10


Chain Y from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ............ Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4psx Y   1 ARTKQTARKSTG  12
                                    10
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PSX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PSX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PSX)

(-) Gene Ontology  (32, 54)

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  4psx
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  H3_YEAST | P61830
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  H4_YEAST | P02309
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  HAT1_YEAST | Q12341
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  HAT2_YEAST | P39984
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  2.3.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H3_YEAST | P61830: 1id3 1m1d 1peg 1pu9 1pua 1qsn 2cnx 2h2g 2idc 2jmj 2rnw 2rnx 2rsn 3mp1 3mp6 3q33 4jjn 4kud 5d7e 5iok
        H4_YEAST | P02309: 1e6i 1id3 1q1a 1szc 1szd 2dvq 2dvr 2e3k 2fsb 2h2h 2l5a 2qqf 2qqg 3to6 4jjn 4kud 4twi 4twj
        HAT1_YEAST | Q12341: 1bob 4psw
        HAT2_YEAST | P39984: 4psw

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4PSX)