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(-) Description

Title :  CRYSTAL STRUCTURE OF TAF14 YEATS DOMAIN IN COMPLEX WITH H3K9AC
 
Authors :  F. H. Andrews, E. K. Shanle, B. D. Strahl, T. G. Kutateladze
Date :  13 Aug 15  (Deposition) - 23 Sep 15  (Release) - 23 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Acetylation Histone Yeats Reader, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. K. Shanle, F. H. Andrews, H. Meriesh, S. L. Mcdaniel, R. Dronamraju, J. V. Difiore, D. Jha, G. G. Wozniak, J. B. Bridgers, J. L. Kerschner, K. Krajewski, G. M. Martin, A. J. Morrison, T. G. Kutateladze, B. D. Strahl
Association Of Taf14 With Acetylated Histone H3 Directs Gen Transcription And The Dna Damage Response.
Genes Dev. V. 29 1795 2015
PubMed-ID: 26341557  |  Reference-DOI: 10.1101/GAD.269977.115

(-) Compounds

Molecule 1 - TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 14
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TAF14, ANC1, CST10, SWP29, TAF30, TFG3, YPL129W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: ACTIN NON-COMPLEMENTING MUTANT 1,CHROMOSOME STABILITY PROTEIN 10,SWI/SNF CHROMATIN-REMODELING COMPLEX SUBUNIT TAF14,SWI/SNF COMPLEX 29 KDA SUBUNIT,SWI/SNF COMPLEX SUBUNIT TAF14,TBP-ASSOCIATED FACTOR 14,TBP-ASSOCIATED FACTOR 30 KDA,TRANSCRIPTION FACTOR G 30 KDA SUBUNIT,TRANSCRIPTION INITIATION FACTOR TFIIF 30 KDA SUBUNIT
 
Molecule 2 - H3K9AC
    Chains: C
    Engineered: YES
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ALY1Mod. Amino AcidN(6)-ACETYLLYSINE
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3PEG3Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:20 , LYS A:53 , THR A:68 , GLU A:129binding site for residue PEG A 201
2AC2SOFTWARELYS A:95 , LYS A:133binding site for residue PEG A 202
3AC3SOFTWAREGLU A:94 , GLU A:98 , LYS A:100 , LYS A:124binding site for residue PEG A 203
4AC4SOFTWARETRP A:81binding site for residue MES A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D7E)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:72 -Pro A:73

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D7E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D7E)

(-) Exons   (0, 0)

(no "Exon" information available for 5D7E)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeeeeeeeeeeee............eeeeeeeeee.....eee...eeeeeee........eeee......eeeee...eeeeeeeee.hhheeeeeeeee.....eeeeeeeeeee..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d7e A  -2 LGSMVATVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHDLNFLQESYEVEHVIQIPLNKPLLTEELAKSGST 137
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137


Chain C from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5d7e C   3 AQTARxST  10
                                 |  
                                 8-ALY
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D7E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D7E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D7E)

(-) Gene Ontology  (37, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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    Pro A:72 - Pro A:73   [ RasMol ]  
 

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  5d7e
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  TAF14_YEAST | P35189
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H3_YEAST | P61830: 1id3 1m1d 1peg 1pu9 1pua 1qsn 2cnx 2h2g 2idc 2jmj 2rnw 2rnx 2rsn 3mp1 3mp6 3q33 4jjn 4kud 4psx 5iok
        TAF14_YEAST | P35189: 2l7e 3qrl 5iok 5sva

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5D7E)