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(-) Description

Title :  STRUCTURE OF HUMAN POLYOMAVIRUS 9 VP1 PENTAMER IN COMPLEX WITH 3'-SIALYLLACTOSE
 
Authors :  Z. M. Khan, T. Stehle
Date :  26 Feb 14  (Deposition) - 09 Apr 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll Fold, Capsid Formation, Receptor Interaction, Carbohydrate, Sialyloligosaccharide, Viral Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. M. Khan, Y. Liu, U. Neu, M. Gilbert, B. Ehlers, T. Feizi, T. Stehle
Crystallographic And Glycan Microarray Analysis Of Human Polyomavirus 9 Vp1 Identifies N-Glycolyl Neuraminic Acid As A Receptor Candidate.
J. Virol. V. 88 6100 2014
PubMed-ID: 24648448  |  Reference-DOI: 10.1128/JVI.03455-13

(-) Compounds

Molecule 1 - VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-305
    Gene: GP3, VP1
    Organism Scientific: HUMAN POLYOMAVIRUS 9
    Organism Taxid: 943908
    Synonym: MAJOR CAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 80)

Asymmetric Unit (6, 80)
No.NameCountTypeFull Name
1BGC9Ligand/IonBETA-D-GLUCOSE
2CA10Ligand/IonCALCIUM ION
3EDO33Ligand/Ion1,2-ETHANEDIOL
4GAL9Ligand/IonBETA-D-GALACTOSE
5IPA10Ligand/IonISOPROPYL ALCOHOL
6SIA9Ligand/IonO-SIALIC ACID
Biological Unit 1 (5, 35)
No.NameCountTypeFull Name
1BGC4Ligand/IonBETA-D-GLUCOSE
2CA-1Ligand/IonCALCIUM ION
3EDO18Ligand/Ion1,2-ETHANEDIOL
4GAL4Ligand/IonBETA-D-GALACTOSE
5IPA5Ligand/IonISOPROPYL ALCOHOL
6SIA4Ligand/IonO-SIALIC ACID
Biological Unit 2 (5, 35)
No.NameCountTypeFull Name
1BGC5Ligand/IonBETA-D-GLUCOSE
2CA-1Ligand/IonCALCIUM ION
3EDO15Ligand/Ion1,2-ETHANEDIOL
4GAL5Ligand/IonBETA-D-GALACTOSE
5IPA5Ligand/IonISOPROPYL ALCOHOL
6SIA5Ligand/IonO-SIALIC ACID

(-) Sites  (62, 62)

Asymmetric Unit (62, 62)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:49 , HOH A:670 , SER B:217 , HOH B:506BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREVAL A:122 , HIS A:154 , MET A:238 , GLN A:239 , HOH A:582 , HOH A:689BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWAREGLY A:134 , GLY A:135 , TYR A:137 , HOH A:598 , ALA B:75 , SER B:76BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWARELYS A:198 , SER A:217 , HOH A:663 , TYR E:51 , MET E:123 , TYR E:289BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREPHE A:156 , TYR A:225 , SER A:227 , HOH A:689BINDING SITE FOR RESIDUE IPA A 405
06AC6SOFTWAREGLU B:49 , SER C:217 , GLU C:220 , HOH C:696BINDING SITE FOR RESIDUE CA B 401
07AC7SOFTWAREHIS B:154 , MET B:238 , GLN B:239 , HOH B:673 , HOH B:682BINDING SITE FOR RESIDUE EDO B 402
08AC8SOFTWARETYR A:51 , LYS B:198 , SER B:217 , HOH B:720BINDING SITE FOR RESIDUE EDO B 403
09AC9SOFTWARESER A:243 , HOH A:703 , ARG B:223 , TYR B:225 , VAL B:247 , LEU B:248 , LEU B:249 , ASP B:250 , HOH B:557 , HOH B:603BINDING SITE FOR RESIDUE EDO B 404
10BC1SOFTWAREHIS B:154 , PHE B:156 , TYR B:225 , GLY B:226 , SER B:227 , HOH B:682BINDING SITE FOR RESIDUE IPA B 405
11BC2SOFTWAREGLU C:49 , SER D:217 , HOH D:509BINDING SITE FOR RESIDUE CA C 401
12BC3SOFTWAREMET C:238 , GLN C:239 , HOH C:559 , HOH C:618 , HOH C:697BINDING SITE FOR RESIDUE EDO C 402
13BC4SOFTWARETYR B:51 , GLN C:166 , LYS C:198 , SER C:217 , HOH C:654 , HOH C:701BINDING SITE FOR RESIDUE EDO C 403
14BC5SOFTWAREGLY C:134 , GLY C:135 , TYR C:137 , TYR C:277 , HOH C:700 , VAL D:74 , ALA D:75BINDING SITE FOR RESIDUE EDO C 404
15BC6SOFTWAREGLY B:134 , GLY B:135 , TYR B:137 , TYR B:277 , HOH B:690 , ALA C:75 , SER C:76BINDING SITE FOR RESIDUE EDO C 405
16BC7SOFTWAREHIS C:154 , PHE C:156 , TYR C:225 , SER C:227BINDING SITE FOR RESIDUE IPA C 406
17BC8SOFTWAREGLU D:49 , SER E:217 , HOH E:604BINDING SITE FOR RESIDUE CA D 401
18BC9SOFTWAREMET D:238 , GLN D:239 , HOH D:644 , HOH D:685BINDING SITE FOR RESIDUE EDO D 402
19CC1SOFTWARETYR C:51 , LYS D:198 , SER D:217BINDING SITE FOR RESIDUE EDO D 403
20CC2SOFTWARELYS C:119 , ASN C:242 , ARG D:223 , VAL D:247 , LEU D:249 , ASP D:250 , HOH D:524 , HOH D:699BINDING SITE FOR RESIDUE EDO D 404
21CC3SOFTWAREGLY D:134 , GLY D:135 , TYR D:137 , HOH D:678 , ALA E:75 , SER E:76BINDING SITE FOR RESIDUE EDO D 405
22CC4SOFTWAREHIS D:154 , PHE D:156 , TYR D:225 , GLY D:226 , SER D:227 , HOH D:644BINDING SITE FOR RESIDUE IPA D 406
23CC5SOFTWARESER A:217 , HOH A:508 , HOH A:668 , GLU E:49BINDING SITE FOR RESIDUE CA E 401
24CC6SOFTWAREVAL E:122 , HIS E:154 , MET E:238 , GLN E:239 , HOH E:519 , HOH E:524BINDING SITE FOR RESIDUE EDO E 402
25CC7SOFTWAREALA A:75 , SER A:76 , GLY E:134 , GLY E:135 , TYR E:137 , TYR E:277BINDING SITE FOR RESIDUE EDO E 403
26CC8SOFTWARETYR D:51 , MET D:123 , LYS E:198 , SER E:217BINDING SITE FOR RESIDUE EDO E 404
27CC9SOFTWAREASN E:53 , ARG E:55 , HOH E:708BINDING SITE FOR RESIDUE EDO E 405
28DC1SOFTWAREPHE E:156 , TYR E:225 , SER E:227BINDING SITE FOR RESIDUE IPA E 406
29DC2SOFTWAREGLU F:49 , HOH F:727 , SER G:217 , HOH G:522BINDING SITE FOR RESIDUE CA F 401
30DC3SOFTWAREVAL F:122 , MET F:238 , GLN F:239 , HOH F:685 , HOH F:696BINDING SITE FOR RESIDUE EDO F 402
31DC4SOFTWARELYS F:198 , ASP F:215 , SER F:217 , HOH F:704 , TYR J:51 , MET J:123BINDING SITE FOR RESIDUE EDO F 403
32DC5SOFTWAREARG F:223 , VAL F:247 , LEU F:248 , LEU F:249 , HOH F:572 , HOH F:591 , HOH F:693 , ASN J:242 , SER J:243BINDING SITE FOR RESIDUE EDO F 404
33DC6SOFTWAREPHE F:156 , TYR F:225 , SER F:227BINDING SITE FOR RESIDUE IPA F 405
34DC7SOFTWAREGLU G:49 , HOH G:525 , SER H:217 , HOH H:624 , HOH H:725BINDING SITE FOR RESIDUE CA G 401
35DC8SOFTWAREVAL G:122 , MET G:238 , GLN G:239 , HOH G:669 , HOH G:704BINDING SITE FOR RESIDUE EDO G 402
36DC9SOFTWARETYR F:51 , LYS G:198 , SER G:217BINDING SITE FOR RESIDUE EDO G 403
37EC1SOFTWAREGLY F:134 , GLY F:135 , TYR F:137 , TYR F:277 , ALA G:75 , SER G:76 , HOH G:616BINDING SITE FOR RESIDUE EDO G 404
38EC2SOFTWAREGLY G:134 , GLY G:135 , TYR G:137 , TYR G:277 , HOH G:537 , HOH G:722 , ALA H:75BINDING SITE FOR RESIDUE EDO G 405
39EC3SOFTWAREPHE G:156 , TYR G:225 , SER G:227 , HOH G:669BINDING SITE FOR RESIDUE IPA G 406
40EC4SOFTWAREGLU H:49 , SER I:217 , HOH I:549 , HOH I:599 , HOH I:645BINDING SITE FOR RESIDUE CA H 401
41EC5SOFTWAREHIS H:154 , MET H:238 , GLN H:239 , HOH H:681 , HOH H:707BINDING SITE FOR RESIDUE EDO H 402
42EC6SOFTWAREGLY H:134 , GLY H:135 , TYR H:137 , TYR H:277 , HOH H:572 , HOH H:719 , ALA I:75 , SER I:76BINDING SITE FOR RESIDUE EDO H 403
43EC7SOFTWARELYS G:119 , ASN G:242 , SER G:243 , ARG H:223 , LEU H:249 , HOH H:590 , HOH H:700BINDING SITE FOR RESIDUE EDO H 404
44EC8SOFTWARETHR B:109 , HOH B:567 , ARG H:39 , THR H:109BINDING SITE FOR RESIDUE EDO H 405
45EC9SOFTWAREHIS H:154 , PHE H:156 , TYR H:225 , SER H:227 , HOH H:707 , HOH H:722BINDING SITE FOR RESIDUE IPA H 406
46FC1SOFTWAREGLU I:49 , HOH I:636 , HOH I:681 , HOH I:688 , SER J:217 , HOH J:655 , HOH J:656BINDING SITE FOR RESIDUE CA I 401
47FC2SOFTWAREVAL I:122 , HIS I:154 , MET I:238 , GLN I:239 , HOH I:690 , HOH I:694BINDING SITE FOR RESIDUE EDO I 402
48FC3SOFTWARETYR H:51 , MET H:123 , LEU I:193 , LYS I:198 , SER I:217 , HOH I:741BINDING SITE FOR RESIDUE EDO I 403
49FC4SOFTWAREGLY I:134 , GLY I:135 , TYR I:137 , TYR I:277 , HOH I:642 , ALA J:75 , SER J:76BINDING SITE FOR RESIDUE EDO I 404
50FC5SOFTWAREPHE I:156 , TYR I:225 , SER I:227 , HOH I:690BINDING SITE FOR RESIDUE IPA I 405
51FC6SOFTWARESER F:217 , HOH F:632 , HOH F:663 , GLU J:49 , HOH J:519BINDING SITE FOR RESIDUE CA J 401
52FC7SOFTWAREHIS J:154 , MET J:238 , GLN J:239 , HOH J:670 , HOH J:678BINDING SITE FOR RESIDUE EDO J 402
53FC8SOFTWAREHIS J:154 , PHE J:156 , TYR J:225 , GLY J:226 , SER J:227 , HOH J:678BINDING SITE FOR RESIDUE IPA J 403
54FC9SOFTWARELEU A:65 , TYR A:68 , ASP A:71 , GLN A:133 , GLY A:134 , HIS A:274 , ASN A:276 , TYR A:277 , ASN A:282 , HOH A:535 , HOH A:544 , HOH A:595 , HOH A:598 , HOH A:612 , HOH A:614 , HOH A:648 , HOH A:674 , HOH A:697 , HOH A:714 , HOH A:741 , HOH A:747 , SER B:76 , SER B:77 , LYS B:78BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 406 TO 408
55GC1SOFTWARELEU B:65 , TYR B:68 , ASP B:71 , GLN B:133 , GLY B:134 , HIS B:274 , ASN B:276 , TYR B:277 , ASN B:282 , HOH B:529 , HOH B:530 , HOH B:532 , HOH B:591 , HOH B:604 , HOH B:605 , HOH B:636 , HOH B:638 , HOH B:688 , HOH B:690 , HOH B:712 , HOH B:742 , HOH B:752 , SER C:76 , SER C:77 , LYS C:78 , HOH C:512BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 406 TO 408
56GC2SOFTWARELEU D:65 , TYR D:68 , ASP D:71 , GLN D:133 , GLY D:134 , GLY D:135 , HIS D:274 , ASN D:276 , TYR D:277 , ASN D:282 , HOH D:518 , HOH D:564 , HOH D:577 , HOH D:677 , HOH D:678 , HOH D:686 , SER E:76 , SER E:77 , LYS E:78 , MET G:100 , ASN G:102 , LEU G:110BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 407 TO 409
57GC3SOFTWARESER A:76 , SER A:77 , LYS A:78 , HOH A:503 , LEU E:65 , TYR E:68 , ASP E:71 , GLN E:133 , GLY E:134 , HIS E:274 , ASN E:276 , TYR E:277 , ASN E:282 , HOH E:513 , HOH E:543 , HOH E:548 , HOH E:561 , HOH E:566 , HOH E:567 , HOH E:584 , HOH E:663 , HOH E:668 , HOH E:702 , HOH H:589 , HOH H:745 , HOH H:746BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 407 TO 409
58GC4SOFTWARELEU F:65 , TYR F:68 , ASP F:71 , GLN F:133 , GLY F:134 , HIS F:274 , ASN F:276 , TYR F:277 , HOH F:508 , HOH F:511 , HOH F:521 , HOH F:547 , HOH F:595 , HOH F:601 , HOH F:603 , HOH F:635 , HOH F:646 , HOH F:697 , SER G:76 , LYS G:78 , HOH G:616BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 406 TO 408
59GC5SOFTWARELEU G:65 , TYR G:68 , ASP G:71 , GLN G:133 , GLY G:134 , HIS G:274 , ASN G:276 , TYR G:277 , ASN G:282 , HOH G:516 , HOH G:528 , HOH G:531 , HOH G:536 , HOH G:537 , HOH G:569 , HOH G:589 , HOH G:599 , HOH G:602 , HOH G:625 , HOH G:661 , SER H:76 , SER H:77 , LYS H:78 , HOH H:508BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 407 TO 409
60GC6SOFTWAREHOH C:657 , LEU H:65 , TYR H:68 , ASP H:71 , GLN H:133 , GLY H:134 , HIS H:274 , ASN H:276 , TYR H:277 , HOH H:504 , HOH H:564 , HOH H:567 , HOH H:571 , HOH H:572 , HOH H:583 , HOH H:606 , HOH H:610 , HOH H:687 , HOH H:689 , SER I:76 , SER I:77 , LYS I:78 , HOH I:504BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 407 TO 409
61GC7SOFTWARELEU I:65 , TYR I:68 , ASP I:71 , GLN I:133 , GLY I:134 , HIS I:274 , ASN I:276 , TYR I:277 , ASN I:282 , HOH I:506 , HOH I:546 , HOH I:571 , HOH I:579 , HOH I:591 , HOH I:620 , HOH I:642 , HOH I:672 , HOH I:683 , HOH I:721 , HOH I:738 , HOH I:747 , SER J:76 , SER J:77 , LYS J:78BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 406 TO 408
62GC8SOFTWARESER F:76 , SER F:77 , LYS F:78 , ASP H:108 , HOH H:741 , LEU J:65 , TYR J:68 , ASP J:71 , GLN J:133 , GLY J:134 , HIS J:274 , ASN J:276 , TYR J:277 , ASN J:282 , HOH J:504 , HOH J:508 , HOH J:536 , HOH J:567 , HOH J:576 , HOH J:581 , HOH J:583 , HOH J:615 , HOH J:635 , HOH J:636 , HOH J:653 , HOH J:661 , HOH J:679BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 404 TO 406

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:107 -I:107
2B:107 -H:107
3C:107 -G:107
4D:107 -F:107

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4POR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4POR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4POR)

(-) Exons   (0, 0)

(no "Exon" information available for 4POR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4pora_ A: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4por A  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4porb_ B: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4por B  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4porc_ C: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por C  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                               102|                                                                                                                                                                                                      
                                                                                                104                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4pord_ D: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4por D  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain E from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4pore_ E: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por E  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                               102|                                                                                                                                                                                                      
                                                                                                104                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4porf_ F: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por F  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  


Chain G from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains d4porg_ G: automated matches                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee.......eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por G  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296      
                                                                                               102|                                                                                                                                                                                                   
                                                                                                107                                                                                                                                                                                                   


Chain H from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4porh_ H: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4por H  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain I from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4pori_ I: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por I  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102  ||   113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                                  105|                                                                                                                                                                                                   
                                                                                                   107                                                                                                                                                                                                   


Chain J from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4porj_ J: automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4por J  32 GVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301
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Class: All beta proteins (24004)

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(no "CATH Domain" information available for 4POR)

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(no "Pfam Domain" information available for 4POR)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E9NQ90_9POLY | E9NQ90: 4poq 4pos 4pot

(-) Related Entries Specified in the PDB File

4fmi MERKEL CELL POLYOMAVIRUS VP1 IN COMPLEX WITH 3'- SIALYLLACTOSAMINE
4mby STRUCTURE OF B-LYMPHOTROPIC POLYOMAVIRUS VP1 PENTAMER IN COMPLEX WITH 3'-SIALYLLACTOSE
4poq
4pos
4pot