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(-) Description

Title :  STRUCTURE OF HUMAN POLYOMAVIRUS 9 VP1 PENTAMER IN COMPLEX WITH 3'-SIALYLLACTOSAMINE
 
Authors :  Z. M. Khan, T. Stehle
Date :  26 Feb 14  (Deposition) - 09 Apr 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll Fold, Capsid Formation, Receptor Interaction, Carbohydrate, Sialyloligosaccharide, Viral Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. M. Khan, Y. Liu, U. Neu, M. Gilbert, B. Ehlers, T. Feizi, T. Stehle
Crystallographic And Glycan Microarray Analysis Of Human Polyomavirus 9 Vp1 Identifies N-Glycolyl Neuraminic Acid As A Receptor Candidate.
J. Virol. V. 88 6100 2014
PubMed-ID: 24648448  |  Reference-DOI: 10.1128/JVI.03455-13

(-) Compounds

Molecule 1 - VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-305
    Gene: GP3, VP1
    Organism Scientific: HUMAN POLYOMAVIRUS 9
    Organism Taxid: 943908
    Synonym: MAJOR CAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 77)

Asymmetric Unit (6, 77)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2EDO30Ligand/Ion1,2-ETHANEDIOL
3GAL9Ligand/IonBETA-D-GALACTOSE
4IPA10Ligand/IonISOPROPYL ALCOHOL
5NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA9Ligand/IonO-SIALIC ACID
Biological Unit 1 (5, 32)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO15Ligand/Ion1,2-ETHANEDIOL
3GAL4Ligand/IonBETA-D-GALACTOSE
4IPA5Ligand/IonISOPROPYL ALCOHOL
5NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA4Ligand/IonO-SIALIC ACID
Biological Unit 2 (5, 35)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO15Ligand/Ion1,2-ETHANEDIOL
3GAL5Ligand/IonBETA-D-GALACTOSE
4IPA5Ligand/IonISOPROPYL ALCOHOL
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
6SIA5Ligand/IonO-SIALIC ACID

(-) Sites  (59, 59)

Asymmetric Unit (59, 59)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:49 , HOH A:589 , HOH A:678 , SER B:217 , HOH B:646BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWARELYS A:198 , SER A:217 , TYR E:51 , MET E:123BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWAREGLY A:134 , GLY A:135 , TYR A:137 , TYR A:277 , HOH A:712 , ALA B:75 , SER B:76BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREGLU A:220 , ASN A:221 , ARG A:223 , ASP A:250 , VAL A:254 , GLY A:255BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWARESER A:77 , ALA A:79 , NAG E:406 , HOH E:546 , ILE H:48 , GLU H:49 , ILE H:96 , HOH H:763BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREARG A:223 , LEU A:249 , ASP A:250 , HOH A:687 , HOH A:724 , LYS E:119 , ASN E:242 , SER E:243BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREVAL A:122 , HIS A:154 , MET A:238 , GLN A:239 , HOH A:611 , HOH A:652BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWAREHIS A:154 , PHE A:156 , TYR A:225 , SER A:227 , HOH A:652BINDING SITE FOR RESIDUE IPA A 408
09AC9SOFTWAREGLU B:49 , SER C:217 , HOH C:697 , HOH C:711BINDING SITE FOR RESIDUE CA B 401
10BC1SOFTWARETYR A:51 , MET A:123 , LYS B:198 , SER B:217 , HOH B:743BINDING SITE FOR RESIDUE EDO B 402
11BC2SOFTWARETYR B:51 , MET B:123 , HOH B:711 , LYS C:198 , SER C:217BINDING SITE FOR RESIDUE EDO B 403
12BC3SOFTWAREASN A:242 , SER A:243 , ARG B:223 , LEU B:249 , ASP B:250BINDING SITE FOR RESIDUE EDO B 404
13BC4SOFTWARETHR B:246 , IPA B:406 , HOH B:661BINDING SITE FOR RESIDUE EDO B 405
14BC5SOFTWAREHIS B:154 , TYR B:225 , GLY B:226 , SER B:227 , EDO B:405 , HOH B:512BINDING SITE FOR RESIDUE IPA B 406
15BC6SOFTWAREGLU C:49 , HOH C:693 , SER D:217 , HOH D:501 , HOH D:667BINDING SITE FOR RESIDUE CA C 401
16BC7SOFTWARETYR C:68 , HIS C:274 , ASN C:276 , ASN C:282BINDING SITE FOR RESIDUE EDO C 402
17BC8SOFTWAREHIS C:154 , PHE C:156 , TYR C:225 , GLY C:226 , SER C:227 , HOH C:623BINDING SITE FOR RESIDUE IPA C 403
18BC9SOFTWAREGLU D:49 , SER E:217 , HOH E:702BINDING SITE FOR RESIDUE CA D 401
19CC1SOFTWAREGLY D:134 , GLY D:135 , TYR D:137 , HOH D:691 , ALA E:75 , SER E:76BINDING SITE FOR RESIDUE EDO D 402
20CC2SOFTWAREGLU D:220 , ASN D:221 , ASP D:250 , VAL D:254 , GLY D:255 , PRO D:256BINDING SITE FOR RESIDUE EDO D 403
21CC3SOFTWAREHIS D:154 , PHE D:156 , TYR D:225 , SER D:227 , HOH D:584BINDING SITE FOR RESIDUE IPA D 404
22CC4SOFTWARESER A:217 , GLU A:220 , HOH A:704 , GLU E:49 , HOH E:501 , HOH E:729BINDING SITE FOR RESIDUE CA E 401
23CC5SOFTWARETYR D:51 , GLN E:166 , LYS E:198 , SER E:217BINDING SITE FOR RESIDUE EDO E 402
24CC6SOFTWARETYR E:225 , THR E:246 , IPA E:404BINDING SITE FOR RESIDUE EDO E 403
25CC7SOFTWAREHIS E:154 , PHE E:156 , TYR E:225 , SER E:227 , EDO E:403 , HOH E:623BINDING SITE FOR RESIDUE IPA E 404
26CC8SOFTWAREGLU F:49 , SER G:217 , HOH G:563BINDING SITE FOR RESIDUE CA F 401
27CC9SOFTWARELYS F:198 , SER F:217 , TYR J:51 , MET J:123BINDING SITE FOR RESIDUE EDO F 402
28DC1SOFTWAREGLY F:134 , GLY F:135 , TYR F:137 , TYR F:277 , HOH F:594 , ALA G:75 , SER G:76BINDING SITE FOR RESIDUE EDO F 403
29DC2SOFTWAREGLU F:220 , ASN F:221 , THR F:222 , ARG F:223 , LEU F:248 , ASP F:250 , VAL F:254 , GLY F:255 , PRO F:256 , HOH F:755BINDING SITE FOR RESIDUE EDO F 404
30DC3SOFTWARELYS F:119 , ASN F:242 , HOH F:768 , ARG G:223 , ASP G:250 , HOH G:635BINDING SITE FOR RESIDUE EDO F 405
31DC4SOFTWAREHIS F:154 , PHE F:156 , TYR F:225 , GLY F:226 , SER F:227 , HOH F:651BINDING SITE FOR RESIDUE IPA F 406
32DC5SOFTWAREGLU G:49 , SER H:217 , HOH H:735BINDING SITE FOR RESIDUE CA G 401
33DC6SOFTWARETYR F:51 , TYR F:289 , LYS G:198 , SER G:217 , HOH G:729BINDING SITE FOR RESIDUE EDO G 402
34DC7SOFTWAREGLY G:134 , GLY G:135 , TYR G:137 , TYR G:277 , HOH G:675 , ALA H:75 , SER H:76BINDING SITE FOR RESIDUE EDO G 403
35DC8SOFTWAREHIS G:154 , PHE G:156 , SER G:227 , HOH G:637BINDING SITE FOR RESIDUE IPA G 404
36DC9SOFTWAREGLU H:49 , HOH H:614 , SER I:217 , GLU I:220 , HOH I:501 , HOH I:687BINDING SITE FOR RESIDUE CA H 401
37EC1SOFTWARETYR G:51 , LYS H:198 , SER H:217BINDING SITE FOR RESIDUE EDO H 402
38EC2SOFTWARETYR H:51 , MET H:123 , HOH H:602 , LYS I:198 , SER I:217BINDING SITE FOR RESIDUE EDO H 403
39EC3SOFTWAREGLY H:134 , GLY H:135 , TYR H:137 , TYR H:277 , HOH H:739 , ALA I:75 , SER I:76BINDING SITE FOR RESIDUE EDO H 404
40EC4SOFTWAREGLY H:57 , ASN H:59 , ASN H:60 , ASP H:63 , HOH H:548 , HOH H:621 , HOH H:751BINDING SITE FOR RESIDUE EDO H 405
41EC5SOFTWAREHIS H:154 , PHE H:156 , SER H:227 , HOH H:563BINDING SITE FOR RESIDUE IPA H 406
42EC6SOFTWAREGLU I:49 , HOH I:755 , SER J:217 , GLU J:220 , HOH J:501BINDING SITE FOR RESIDUE CA I 401
43EC7SOFTWARETYR I:51 , MET I:123 , LYS J:198 , ASP J:215 , SER J:217BINDING SITE FOR RESIDUE EDO I 402
44EC8SOFTWAREGLU I:220 , ASN I:221 , ARG I:223 , ASP I:250 , GLY I:255 , HOH I:742 , HOH I:756BINDING SITE FOR RESIDUE EDO I 403
45EC9SOFTWARELYS I:119 , ASN I:242 , ARG J:223 , LEU J:249 , ASP J:250BINDING SITE FOR RESIDUE EDO I 404
46FC1SOFTWAREASN H:242 , SER H:243 , HOH H:741 , ARG I:223 , LEU I:248 , LEU I:249 , ASP I:250 , HOH I:617BINDING SITE FOR RESIDUE EDO I 405
47FC2SOFTWAREHIS I:154 , PHE I:156 , TYR I:225 , SER I:227 , HOH I:586BINDING SITE FOR RESIDUE IPA I 406
48FC3SOFTWARESER F:217 , HOH F:745 , HOH F:757 , GLU J:49 , HOH J:740BINDING SITE FOR RESIDUE CA J 401
49FC4SOFTWAREGLY I:134 , GLY I:135 , TYR I:137 , TYR I:277 , VAL J:74 , ALA J:75 , SER J:76BINDING SITE FOR RESIDUE EDO J 402
50FC5SOFTWAREHIS J:154 , PHE J:156 , TYR J:225 , GLY J:226 , SER J:227 , HOH J:626BINDING SITE FOR RESIDUE IPA J 403
51FC6SOFTWARELEU A:65 , TYR A:68 , ASP A:71 , GLN A:133 , GLY A:134 , HIS A:274 , ASN A:276 , TYR A:277 , ASN A:282 , HOH A:569 , HOH A:570 , HOH A:610 , HOH A:647 , HOH A:712 , HOH A:713 , HOH A:714 , SER B:76 , SER B:77 , LYS B:78BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 409 TO 411
52FC7SOFTWARELEU B:65 , TYR B:68 , ASP B:71 , GLN B:133 , GLY B:134 , HIS B:274 , ASN B:276 , TYR B:277 , ASN B:282 , HOH B:525 , HOH B:553 , HOH B:560 , HOH B:575 , HOH B:601 , HOH B:648 , HOH B:658 , HOH B:665 , HOH B:739 , HOH B:740 , HOH B:752 , HOH B:753 , HOH B:754 , SER C:76 , SER C:77 , LYS C:78 , HOH C:567BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 407 TO 409
53FC8SOFTWARELEU D:65 , TYR D:68 , ASP D:71 , GLN D:133 , GLY D:134 , HIS D:274 , ASN D:276 , TYR D:277 , ASN D:282 , HOH D:601 , HOH D:653 , HOH D:673 , HOH D:691 , HOH D:719 , HOH D:720 , HOH D:727 , HOH D:737 , SER E:76 , SER E:77 , LYS E:78 , HOH E:616 , ASN G:102 , MET G:105 , LEU G:110 , ASN G:301 , HOH G:730BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 405 TO 407
54FC9SOFTWARESER A:77 , LYS A:78 , EDO A:405 , HOH A:715 , LEU E:65 , TYR E:68 , ASP E:71 , GLN E:133 , GLY E:134 , HIS E:274 , ASN E:276 , TYR E:277 , ASN E:282 , HOH E:546 , HOH E:551 , HOH E:556 , HOH E:557 , HOH E:565 , HOH E:632 , HOH E:656 , HOH E:695 , HOH E:708 , HOH E:727 , HOH E:741 , HOH E:746 , HOH E:753 , GLU H:49 , HOH I:687BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 405 TO 407
55GC1SOFTWARELEU F:65 , TYR F:68 , ASP F:71 , GLN F:133 , GLY F:134 , HIS F:274 , ASN F:276 , TYR F:277 , HOH F:545 , HOH F:551 , HOH F:590 , HOH F:594 , HOH F:597 , HOH F:605 , HOH F:630 , HOH F:634 , HOH F:669 , HOH F:674 , HOH F:719 , HOH F:747 , SER G:76 , SER G:77 , LYS G:78BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 407 TO 409
56GC2SOFTWARELEU G:65 , TYR G:68 , ASP G:71 , GLN G:133 , GLY G:134 , HIS G:274 , ASN G:276 , TYR G:277 , ASN G:282 , HOH G:505 , HOH G:583 , HOH G:599 , HOH G:602 , HOH G:610 , HOH G:627 , HOH G:673 , HOH G:675 , HOH G:683 , HOH G:727 , HOH G:728 , SER H:76 , SER H:77 , LYS H:78BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 405 TO 407
57GC3SOFTWAREHOH C:629 , LEU H:65 , TYR H:68 , ASP H:71 , GLN H:133 , GLY H:134 , HIS H:274 , ASN H:276 , TYR H:277 , ASN H:282 , HOH H:512 , HOH H:525 , HOH H:535 , HOH H:581 , HOH H:606 , HOH H:616 , HOH H:625 , HOH H:641 , HOH H:669 , HOH H:682 , HOH H:738 , HOH H:767 , SER I:76 , SER I:77 , LYS I:78BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 407 TO 409
58GC4SOFTWARELEU I:65 , TYR I:68 , ASP I:71 , GLN I:133 , GLY I:134 , HIS I:274 , ASN I:276 , TYR I:277 , ASN I:282 , HOH I:509 , HOH I:524 , HOH I:557 , HOH I:573 , HOH I:611 , HOH I:630 , HOH I:631 , HOH I:635 , HOH I:647 , HOH I:665 , HOH I:759 , SER J:76 , SER J:77 , LYS J:78BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 407 TO 409
59GC5SOFTWAREMET B:100 , GLU B:103 , HOH B:626 , SER F:76 , SER F:77 , LYS F:78 , ASP H:108 , LEU J:65 , TYR J:68 , ASP J:71 , GLN J:133 , GLY J:134 , HIS J:274 , ASN J:276 , TYR J:277 , ASN J:282 , HOH J:535 , HOH J:541 , HOH J:542 , HOH J:552 , HOH J:586 , HOH J:591 , HOH J:598 , HOH J:615 , HOH J:623 , HOH J:668 , HOH J:718 , HOH J:754 , HOH J:756BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 404 TO 406

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:107 -I:107
2B:107 -H:107
3C:107 -G:107
4D:107 -F:107
5E:107 -J:107

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4POS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4POS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4POS)

(-) Exons   (0, 0)

(no "Exon" information available for 4POS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4posa_ A: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pos A  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4posb_ B: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pos B  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4posc_ C: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos C  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102||     113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                                103|                                                                                                                                                                                                     
                                                                                                 105                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4posd_ D: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos D  32 GVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301 


Chain E from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4pose_ E: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pos E  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain F from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4posf_ F: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos F  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  


Chain G from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4posg_ G: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pos G  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain H from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4posh_ H: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos H  32 GVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301 


Chain I from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4posi_ I: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos I  31 GGVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300  


Chain J from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4posj_ J: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pos J  31 GGVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
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Class: All beta proteins (24004)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E9NQ90_9POLY | E9NQ90: 4poq 4por 4pot

(-) Related Entries Specified in the PDB File

4fmi MERKEL CELL POLYOMAVIRUS VP1 IN COMPLEX WITH 3'- SIALYLLACTOSAMINE
4mbz STRUCTURE OF B-LYMPHOTROPIC POLYOMAVIRUS VP1 PENTAMER IN COMPLEX WITH 3'-SIALYLLACTOSAMINE
4poq
4por
4pot