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(-) Description

Title :  STRUCTURE OF B-LYMPHOTROPIC POLYOMAVIRUS VP1 IN COMPLEX WITH 3'-SIALYLLACTOSE
 
Authors :  Z. M. Khan, U. Neu, T. Stehle
Date :  21 Aug 13  (Deposition) - 04 Dec 13  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll, Polyomavirus, Viral Capsid (Structural) Protein, Dna Encapsidation, Receptor Binding, Sialylated Oligosaccharides, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Neu, Z. M. Khan, B. Schuch, A. S. Palma, Y. Liu, M. Pawlita, T. Feizi, T. Stehle
Structures Of B-Lymphotropic Polyomavirus Vp1 In Complex With Oligosaccharide Ligands.
Plos Pathog. V. 9 03714 2013
PubMed-ID: 24204265  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1003714

(-) Compounds

Molecule 1 - MAJOR CAPSID PROTEIN VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VP1
    Organism Scientific: B-LYMPHOTROPIC POLYOMAVIRUS
    Organism Taxid: 332091

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 82)

Asymmetric Unit (7, 82)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2CA10Ligand/IonCALCIUM ION
3CL10Ligand/IonCHLORIDE ION
4EDO32Ligand/Ion1,2-ETHANEDIOL
5GAL9Ligand/IonBETA-D-GALACTOSE
6IPA10Ligand/IonISOPROPYL ALCOHOL
7SIA9Ligand/IonO-SIALIC ACID
Biological Unit 1 (4, 35)
No.NameCountTypeFull Name
1BGC-1Ligand/IonBETA-D-GLUCOSE
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4EDO20Ligand/Ion1,2-ETHANEDIOL
5GAL5Ligand/IonBETA-D-GALACTOSE
6IPA5Ligand/IonISOPROPYL ALCOHOL
7SIA5Ligand/IonO-SIALIC ACID
Biological Unit 2 (5, 27)
No.NameCountTypeFull Name
1BGC2Ligand/IonBETA-D-GLUCOSE
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4EDO12Ligand/Ion1,2-ETHANEDIOL
5GAL4Ligand/IonBETA-D-GALACTOSE
6IPA5Ligand/IonISOPROPYL ALCOHOL
7SIA4Ligand/IonO-SIALIC ACID

(-) Sites  (71, 71)

Asymmetric Unit (71, 71)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:46 , HOH A:716 , SER B:214 , GLU B:217 , HOH B:744 , HOH B:813BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWARELYS A:181BINDING SITE FOR RESIDUE CL A 402
03AC3SOFTWAREGLN A:44 , SER A:114 , VAL A:115 , THR A:242 , ASN A:288 , VAL A:289 , THR A:290 , HOH A:631 , HOH A:828BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREPRO A:174 , ASP A:175 , VAL A:177 , HOH A:619 , HOH A:706 , HOH A:841 , HOH A:842 , ASP E:175BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWAREGLU A:217 , ASN A:218 , ARG A:220 , ASP A:247 , VAL A:251 , GLY A:252 , LEU A:254 , HOH A:845BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWARETRP A:110 , LYS A:293BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREPHE A:153 , TYR A:222 , THR A:243 , IPA A:408BINDING SITE FOR RESIDUE EDO A 407
08AC8SOFTWAREHIS A:151 , PHE A:153 , TYR A:222 , SER A:224 , EDO A:407 , HOH A:592BINDING SITE FOR RESIDUE IPA A 408
09AC9SOFTWAREGLU B:46 , HOH B:684 , HOH B:775 , SER C:214 , GLU C:217 , HOH C:696 , HOH C:703BINDING SITE FOR RESIDUE CA B 401
10BC1SOFTWARELYS B:181 , HOH B:738BINDING SITE FOR RESIDUE CL B 402
11BC2SOFTWAREGLN B:44 , SER B:114 , VAL B:115 , LYS B:116 , THR B:242 , ASN B:288 , THR B:290 , HOH B:517 , HOH B:591BINDING SITE FOR RESIDUE EDO B 403
12BC3SOFTWAREASN B:55 , GLU B:60 , ASN B:67 , LYS B:82 , ASP B:83BINDING SITE FOR RESIDUE EDO B 404
13BC4SOFTWAREGLU B:217 , ASN B:218 , ARG B:220 , GLY B:252 , MET J:27BINDING SITE FOR RESIDUE EDO B 405
14BC5SOFTWAREGLU B:31 , ASN C:249 , GLY C:250 , VAL C:251 , HOH C:705 , GLY I:28 , GLY I:29BINDING SITE FOR RESIDUE EDO B 406
15BC6SOFTWARELEU B:97 , LEU B:98 , ASN B:99 , GLY B:257 , ASP B:258BINDING SITE FOR RESIDUE EDO B 407
16BC7SOFTWAREASN B:81 , LYS B:82 , HOH B:624BINDING SITE FOR RESIDUE EDO B 408
17BC8SOFTWAREPHE B:153 , TYR B:222 , GLY B:223 , HOH B:601BINDING SITE FOR RESIDUE IPA B 409
18BC9SOFTWAREGLU C:46 , HOH C:603 , SER D:214 , GLU D:217 , HOH D:672 , HOH D:719 , HOH D:759BINDING SITE FOR RESIDUE CA C 401
19CC1SOFTWARELYS C:181 , HOH C:554 , HOH C:666BINDING SITE FOR RESIDUE CL C 402
20CC2SOFTWAREGLN C:44 , SER C:114 , VAL C:115 , THR C:242 , ASN C:288 , THR C:290 , HOH C:650 , HOH C:778BINDING SITE FOR RESIDUE EDO C 403
21CC3SOFTWAREASN C:55 , GLU C:60 , ASN C:67 , ASP C:83 , HOH C:503BINDING SITE FOR RESIDUE EDO C 404
22CC4SOFTWARELEU C:98 , ASN C:99 , GLY C:257 , ASP C:258BINDING SITE FOR RESIDUE EDO C 405
23CC5SOFTWAREHIS C:151 , PHE C:153 , TYR C:222 , SER C:224 , HOH C:601BINDING SITE FOR RESIDUE IPA C 406
24CC6SOFTWAREGLU D:46 , HOH D:671 , HOH D:755 , SER E:214 , GLU E:217 , HOH E:756BINDING SITE FOR RESIDUE CA D 401
25CC7SOFTWARELYS D:181BINDING SITE FOR RESIDUE CL D 402
26CC8SOFTWARELEU D:98 , ASN D:99 , MET D:102 , ASP D:258BINDING SITE FOR RESIDUE EDO D 403
27CC9SOFTWARETHR D:117 , ARG D:285 , HOH D:533 , HOH D:588 , HOH D:753BINDING SITE FOR RESIDUE EDO D 404
28DC1SOFTWAREHIS D:151 , PHE D:153 , TYR D:222 , GLY D:223 , SER D:224 , HOH D:588BINDING SITE FOR RESIDUE IPA D 405
29DC2SOFTWARESER A:214 , GLU A:217 , HOH A:501 , HOH A:504 , HOH A:764 , GLU E:46 , HOH E:691BINDING SITE FOR RESIDUE CA E 401
30DC3SOFTWARELYS E:181 , HOH E:574BINDING SITE FOR RESIDUE CL E 402
31DC4SOFTWAREGLN E:44 , SER E:114 , VAL E:115 , LYS E:116 , THR E:242 , ASN E:288 , THR E:290 , HOH E:683BINDING SITE FOR RESIDUE EDO E 403
32DC5SOFTWAREASP A:175 , ASP E:175 , VAL E:177 , HOH E:679 , HOH E:759 , HOH E:770BINDING SITE FOR RESIDUE EDO E 404
33DC6SOFTWARETHR E:117 , ARG E:285 , IPA E:407 , HOH E:536 , HOH E:571 , HOH E:825BINDING SITE FOR RESIDUE EDO E 405
34DC7SOFTWAREGLU E:217 , ASN E:218 , ARG E:220 , ASP E:247 , GLY E:252 , MET G:27 , HOH G:614BINDING SITE FOR RESIDUE EDO E 406
35DC8SOFTWAREHIS E:151 , PHE E:153 , TYR E:222 , SER E:224 , EDO E:405 , HOH E:571BINDING SITE FOR RESIDUE IPA E 407
36DC9SOFTWAREGLU F:46 , HOH F:679 , SER G:214 , GLU G:217 , HOH G:501 , HOH G:633 , HOH G:679BINDING SITE FOR RESIDUE CA F 401
37EC1SOFTWARELYS F:181 , HOH F:703BINDING SITE FOR RESIDUE CL F 402
38EC2SOFTWAREMET A:27 , GLU F:217 , ASN F:218 , ARG F:220 , GLY F:252BINDING SITE FOR RESIDUE EDO F 403
39EC3SOFTWAREHIS F:151 , PHE F:153 , TYR F:222 , SER F:224 , HOH F:740BINDING SITE FOR RESIDUE IPA F 404
40EC4SOFTWAREGLU G:46 , HOH G:640 , SER H:214 , GLU H:217 , HOH H:502 , HOH H:642 , HOH H:690BINDING SITE FOR RESIDUE CA G 401
41EC5SOFTWARELYS G:181 , HOH G:643BINDING SITE FOR RESIDUE CL G 402
42EC6SOFTWARETHR G:117 , ARG G:285 , IPA G:405 , HOH G:522 , HOH G:591BINDING SITE FOR RESIDUE EDO G 403
43EC7SOFTWAREHOH E:611 , GLU G:217 , ASN G:218 , ARG G:220 , VAL G:251 , GLY G:252BINDING SITE FOR RESIDUE EDO G 404
44EC8SOFTWAREHIS G:151 , PHE G:153 , GLY G:223 , SER G:224 , EDO G:403 , HOH G:591 , HOH G:723BINDING SITE FOR RESIDUE IPA G 405
45EC9SOFTWAREGLU H:46 , HOH H:635 , SER I:214 , GLU I:217 , HOH I:501 , HOH I:674BINDING SITE FOR RESIDUE CA H 401
46FC1SOFTWARELYS H:181 , HOH H:651BINDING SITE FOR RESIDUE CL H 402
47FC2SOFTWARETHR H:117 , ARG H:285 , IPA H:406 , HOH H:537 , HOH H:574 , HOH H:620BINDING SITE FOR RESIDUE EDO H 403
48FC3SOFTWAREGLY D:29 , GLU G:31 , LEU G:33 , ASN H:249 , ARG H:294 , HOH H:697BINDING SITE FOR RESIDUE EDO H 404
49FC4SOFTWAREMET D:27 , GLU H:217 , ASN H:218 , ARG H:220 , GLY H:252BINDING SITE FOR RESIDUE EDO H 405
50FC5SOFTWAREHIS H:151 , PHE H:153 , TYR H:222 , SER H:224 , EDO H:403 , HOH H:574BINDING SITE FOR RESIDUE IPA H 406
51FC6SOFTWAREGLU I:46 , SER J:214 , HOH J:503 , HOH J:513 , HOH J:716BINDING SITE FOR RESIDUE CA I 401
52FC7SOFTWARELYS I:181BINDING SITE FOR RESIDUE CL I 402
53FC8SOFTWARELEU I:98 , ASN I:99 , GLY I:257 , ASP I:258BINDING SITE FOR RESIDUE EDO I 403
54FC9SOFTWARETHR I:117 , ARG I:285 , HOH I:554 , HOH I:564 , HOH I:579BINDING SITE FOR RESIDUE EDO I 404
55GC1SOFTWAREHIS I:151 , PHE I:153 , TYR I:222 , SER I:224 , HOH I:579BINDING SITE FOR RESIDUE IPA I 405
56GC2SOFTWARESER F:214 , GLU F:217 , HOH F:502 , HOH F:503 , GLU J:46 , HOH J:658 , HOH J:751BINDING SITE FOR RESIDUE CA J 401
57GC3SOFTWARELYS J:181BINDING SITE FOR RESIDUE CL J 402
58GC4SOFTWAREGLN J:44 , SER J:114 , VAL J:115 , LYS J:116 , THR J:242 , ASN J:288 , VAL J:289 , THR J:290 , HOH J:686BINDING SITE FOR RESIDUE EDO J 403
59GC5SOFTWARELEU J:98 , ASN J:99 , GLY J:257 , ASP J:258 , EDO J:405BINDING SITE FOR RESIDUE EDO J 404
60GC6SOFTWAREASN J:99 , ILE J:107 , LEU J:108 , LYS J:256 , GLY J:257 , ASP J:258 , EDO J:404BINDING SITE FOR RESIDUE EDO J 405
61GC7SOFTWARETHR J:117 , ARG J:285 , HOH J:538 , HOH J:616BINDING SITE FOR RESIDUE EDO J 406
62GC8SOFTWAREPHE J:153 , TYR J:222 , SER J:224 , HOH J:616BINDING SITE FOR RESIDUE IPA J 407
63GC9SOFTWARELEU A:62 , TYR A:65 , GLN A:130 , GLY A:131 , HIS A:271 , ASN A:273 , TYR A:274 , HOH A:556 , HOH A:617 , HOH A:653 , HOH A:669 , HOH A:686 , HOH A:720 , HOH A:724 , HOH A:786 , SER B:74 , LYS B:75 , HOH B:663BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 409 TO 410
64HC1SOFTWARETYR B:65 , GLN B:130 , GLY B:131 , HIS B:271 , ASN B:273 , TYR B:274 , HOH B:573 , HOH B:630 , HOH B:669 , HOH B:728 , HOH B:779 , HOH B:817 , HOH B:818 , SER C:74 , LYS C:75 , HOH C:727BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 410 TO 411
65HC2SOFTWARELEU C:62 , TYR C:65 , GLN C:130 , GLY C:131 , HIS C:271 , ASN C:273 , TYR C:274 , HOH C:505 , HOH C:619 , HOH C:628 , HOH C:629 , HOH C:742 , HOH C:780 , HOH C:814 , SER D:74 , LYS D:75BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 407 TO 408
66HC3SOFTWARETYR D:65 , GLN D:130 , GLY D:131 , HIS D:271 , ASN D:273 , TYR D:274 , HOH D:627 , HOH D:630 , HOH D:635 , HOH D:706 , HOH D:743 , HOH D:746 , HOH D:751 , HOH D:761 , PHE E:73 , SER E:74 , LYS E:75BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 406 TO 407
67HC4SOFTWARESER A:74 , LYS A:75 , LEU E:62 , TYR E:65 , GLN E:130 , GLY E:131 , HIS E:271 , ASN E:273 , TYR E:274 , HOH E:628 , HOH E:634 , HOH E:648 , HOH E:650 , HOH E:664 , HOH E:677 , HOH E:758 , HOH E:791 , HOH E:824 , HOH E:829BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 408 TO 409
68HC5SOFTWARETYR G:65 , GLN G:130 , GLY G:131 , HIS G:271 , ASN G:273 , TYR G:274 , HOH G:573 , HOH G:600 , HOH G:644 , HOH G:667 , HOH G:724 , PHE H:73 , SER H:74 , LYS H:75BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 406 TO 407
69HC6SOFTWARELEU H:62 , TYR H:65 , GLN H:130 , GLY H:131 , HIS H:271 , ASN H:273 , TYR H:274 , HOH H:575 , HOH H:638 , HOH H:657 , HOH H:658 , HOH H:666 , HOH H:685 , HOH H:687 , HOH H:731 , PHE I:73 , SER I:74 , LYS I:75BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 407 TO 408
70HC7SOFTWARELEU I:62 , TYR I:65 , GLN I:130 , GLY I:131 , HIS I:271 , ASN I:273 , TYR I:274 , HOH I:566 , HOH I:575 , HOH I:582 , HOH I:589 , HOH I:597 , HOH I:616 , HOH I:655 , HOH I:658 , HOH I:668 , HOH I:713 , PHE J:73 , SER J:74 , LYS J:75BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 406 TO 408
71HC8SOFTWARESER F:74 , LYS F:75 , LEU J:62 , TYR J:65 , GLN J:130 , GLY J:131 , HIS J:271 , ASN J:273 , TYR J:274 , HOH J:572 , HOH J:607 , HOH J:626 , HOH J:637 , HOH J:679 , HOH J:688 , HOH J:690 , HOH J:697 , HOH J:723 , HOH J:733 , HOH J:752BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 408 TO 410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MBY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MBY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MBY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MBY)

(-) Exons   (0, 0)

(no "Exon" information available for 4MBY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mbya_ A: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby A  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPYP 301
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       


Chain B from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mbyb_ B: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby B  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294     


Chain C from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mbyc_ C: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby C  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294     


Chain D from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mbyd_ D: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby D  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104|      115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295    
                                                                                                         104|                                                                                                                                                                                                 
                                                                                                          106                                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:277
                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4mbye_ E: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby E  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNPYP 301
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       


Chain F from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mbyf_ F: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby F  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKN 298
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294    


Chain G from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4mbyg_ G: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee.........eeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mby G  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNMTCTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVK 297
                                    34        44        54        64        74        84        94    || 107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297
                                                                                                     99| ||                                                                                                                                                                                               
                                                                                                     102 ||                                                                                                                                                                                               
                                                                                                       104|                                                                                                                                                                                               
                                                                                                        106                                                                                                                                                                                               


Chain H from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4mbyh_ H: automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby H  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKN 298
                                    34        44        54        64        74        84        94       104|      115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295   
                                                                                                         104|                                                                                                                                                                                                
                                                                                                          106                                                                                                                                                                                                


Chain I from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4mbyi_ I: automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby I  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKN 298
                                    34        44        54        64        74        84        94       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295   
                                                                                                       102|                                                                                                                                                                                                  
                                                                                                        104                                                                                                                                                                                                  


Chain J from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4mbyj_ J: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.....eeeeeeee.......................................eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mby J  25 SHMGGVEVLEVRTGPDAITQIEAYLNPRMGNNIPSEDLYGYSNSINTAFSKASDTPNKDTLPCYSVAVIKLPLLNEDMTCDTILMWEAVSVKTEVVGISSLVNLHQGGKYIYGSSSGCVPVQGTTYHMFAVGGEPLELQGLVASSTATYPDDVVAIKNMKPGNQGLDPKAKALLDKDGKYPVEVWCPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSCADIAGVHTNYSETQVWRGLPRYFNVTLRKRIVKNP 299
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(-) SCOP Domains  (1, 10)

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Class: All beta proteins (24004)

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(no "CATH Domain" information available for 4MBY)

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(-) Gene Ontology  (9, 9)

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        VP1_POVLY | P04010: 4mbx 4mbz

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4mbx 4mbz