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(-) Description

Title :  STRUCTURE OF HUMAN POLYOMAVIRUS 9 VP1 PENTAMER IN COMPLEX WITH N-GLYCOLYLNEURAMINIC ACID CONTAINING 3'-SIALYLLACTOSAMINE
 
Authors :  Z. M. Khan, T. Stehle
Date :  26 Feb 14  (Deposition) - 09 Apr 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll Fold, Capsid Formation, Receptor Interaction, Carbohydrate, Sialyloligosaccharide, Viral Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. M. Khan, Y. Liu, U. Neu, M. Gilbert, B. Ehlers, T. Feizi, T. Stehle
Crystallographic And Glycan Microarray Analysis Of Human Polyomavirus 9 Vp1 Identifies N-Glycolyl Neuraminic Acid As A Receptor Candidate.
J. Virol. V. 88 6100 2014
PubMed-ID: 24648448  |  Reference-DOI: 10.1128/JVI.03455-13

(-) Compounds

Molecule 1 - VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-305
    Gene: GP3, VP1
    Organism Scientific: HUMAN POLYOMAVIRUS 9
    Organism Taxid: 943908
    Synonym: MAJOR CAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 79)

Asymmetric Unit (6, 79)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2EDO29Ligand/Ion1,2-ETHANEDIOL
3GAL10Ligand/IonBETA-D-GALACTOSE
4IPA10Ligand/IonISOPROPYL ALCOHOL
5NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NGC10Ligand/Ion3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC ACID
Biological Unit 1 (5, 34)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO14Ligand/Ion1,2-ETHANEDIOL
3GAL5Ligand/IonBETA-D-GALACTOSE
4IPA5Ligand/IonISOPROPYL ALCOHOL
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NGC5Ligand/Ion3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC ACID
Biological Unit 2 (5, 35)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO15Ligand/Ion1,2-ETHANEDIOL
3GAL5Ligand/IonBETA-D-GALACTOSE
4IPA5Ligand/IonISOPROPYL ALCOHOL
5NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
6NGC5Ligand/Ion3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC ACID

(-) Sites  (59, 59)

Asymmetric Unit (59, 59)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:49 , SER B:217 , HOH B:621BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREGLY A:134 , GLY A:135 , TYR A:137 , TYR A:277 , HOH A:575 , VAL B:74 , ALA B:75 , SER B:76BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWAREVAL A:122 , MET A:238 , GLN A:239 , HOH A:699BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWAREHIS A:154 , PHE A:156 , TYR A:225 , GLY A:226 , SER A:227 , HOH A:699BINDING SITE FOR RESIDUE IPA A 404
05AC5SOFTWAREGLU B:49 , HOH B:640 , HOH B:698 , SER C:217 , HOH C:549 , HOH C:574BINDING SITE FOR RESIDUE CA B 401
06AC6SOFTWAREVAL B:122 , HIS B:154 , MET B:238 , GLN B:239 , HOH B:555BINDING SITE FOR RESIDUE EDO B 402
07AC7SOFTWARELYS B:119 , ASN B:242 , HOH B:687 , ASN C:219 , GLU C:220 , ARG C:223BINDING SITE FOR RESIDUE EDO B 403
08AC8SOFTWAREHIS B:154 , PHE B:156 , TYR B:225 , GLY B:226 , SER B:227 , HOH B:555BINDING SITE FOR RESIDUE IPA B 404
09AC9SOFTWAREGLU C:49 , HOH C:623 , SER D:217 , HOH D:599 , HOH D:682BINDING SITE FOR RESIDUE CA C 401
10BC1SOFTWAREARG C:39 , THR C:109 , THR G:109 , EDO G:402BINDING SITE FOR RESIDUE EDO C 402
11BC2SOFTWARETYR B:51 , MET B:123 , LYS C:198 , ASP C:215 , SER C:217BINDING SITE FOR RESIDUE EDO C 403
12BC3SOFTWAREHIS C:154 , MET C:238 , GLN C:239 , HOH C:503 , HOH C:582BINDING SITE FOR RESIDUE EDO C 404
13BC4SOFTWAREGLY C:134 , GLY C:135 , TYR C:137 , TYR C:277 , HOH C:589 , HOH C:640 , ALA D:75 , SER D:76BINDING SITE FOR RESIDUE EDO C 405
14BC5SOFTWAREPHE C:156 , TYR C:225 , GLY C:226 , SER C:227BINDING SITE FOR RESIDUE IPA C 406
15BC6SOFTWAREGLU D:49 , SER E:217 , HOH E:582BINDING SITE FOR RESIDUE CA D 401
16BC7SOFTWAREGLU D:220 , ASN D:221 , ARG D:223 , ASP D:250 , GLY D:255 , HOH D:683BINDING SITE FOR RESIDUE EDO D 402
17BC8SOFTWAREARG D:39 , THR D:109 , VAL D:298 , ARG F:39 , ASP F:108 , THR F:109BINDING SITE FOR RESIDUE EDO D 403
18BC9SOFTWAREHIS D:154 , MET D:238 , GLN D:239 , HOH D:518BINDING SITE FOR RESIDUE EDO D 404
19CC1SOFTWAREGLY D:140 , SER D:141 , SER D:142 , SER E:278 , GLU E:279BINDING SITE FOR RESIDUE EDO D 405
20CC2SOFTWAREHIS D:154 , PHE D:156 , GLY D:226 , SER D:227 , HOH D:518BINDING SITE FOR RESIDUE IPA D 406
21CC3SOFTWARESER A:217 , HOH A:524 , HOH A:658 , GLU E:49 , HOH E:501BINDING SITE FOR RESIDUE CA E 401
22CC4SOFTWARETYR D:51 , GLN E:166 , LYS E:198 , SER E:217BINDING SITE FOR RESIDUE EDO E 402
23CC5SOFTWAREHIS E:154 , MET E:238 , GLN E:239 , HOH E:659BINDING SITE FOR RESIDUE EDO E 403
24CC6SOFTWAREHIS E:154 , PHE E:156 , GLY E:226 , SER E:227 , HOH E:613 , HOH E:659BINDING SITE FOR RESIDUE IPA E 404
25CC7SOFTWAREGLU F:49 , SER G:217 , HOH G:596 , HOH G:692BINDING SITE FOR RESIDUE CA F 401
26CC8SOFTWAREGLU F:220 , ASN F:221 , ARG F:223 , ASP F:250 , GLY F:255BINDING SITE FOR RESIDUE EDO F 402
27CC9SOFTWAREHIS F:154 , MET F:238 , GLN F:239 , HOH F:530BINDING SITE FOR RESIDUE EDO F 403
28DC1SOFTWAREGLY F:134 , GLY F:135 , TYR F:137 , TYR F:277 , HOH F:592 , ALA G:75 , SER G:76BINDING SITE FOR RESIDUE EDO F 404
29DC2SOFTWAREPHE F:156 , SER F:227 , ARG F:288BINDING SITE FOR RESIDUE IPA F 405
30DC3SOFTWAREGLU G:49 , SER H:217 , HOH H:620 , HOH H:658BINDING SITE FOR RESIDUE CA G 401
31DC4SOFTWARETHR C:109 , EDO C:402 , ARG G:39 , THR G:109BINDING SITE FOR RESIDUE EDO G 402
32DC5SOFTWAREGLY G:134 , GLY G:135 , TYR G:137 , TYR G:277 , HOH G:534 , VAL H:74 , ALA H:75 , SER H:76BINDING SITE FOR RESIDUE EDO G 403
33DC6SOFTWARETHR B:62 , GLU B:64 , TYR G:137 , TYR G:277 , HOH G:668 , HOH G:680BINDING SITE FOR RESIDUE EDO G 404
34DC7SOFTWARETYR F:51 , TYR F:289 , LEU G:193 , LYS G:198 , SER G:217 , HOH G:732BINDING SITE FOR RESIDUE EDO G 405
35DC8SOFTWAREVAL G:122 , HIS G:154 , MET G:238 , GLN G:239 , HOH G:591 , HOH G:667BINDING SITE FOR RESIDUE EDO G 406
36DC9SOFTWAREHIS G:154 , TYR G:225 , GLY G:226 , SER G:227 , HOH G:591 , HOH G:666BINDING SITE FOR RESIDUE IPA G 407
37EC1SOFTWAREGLU H:49 , HOH H:647 , HOH H:732 , SER I:217 , GLU I:220 , HOH I:728BINDING SITE FOR RESIDUE CA H 401
38EC2SOFTWAREVAL H:122 , MET H:238 , GLN H:239 , HOH H:521 , HOH H:683BINDING SITE FOR RESIDUE EDO H 402
39EC3SOFTWARETYR G:51 , TYR G:289 , LYS H:198 , SER H:217BINDING SITE FOR RESIDUE EDO H 403
40EC4SOFTWAREHIS H:154 , PHE H:156 , GLY H:226 , SER H:227 , HOH H:521BINDING SITE FOR RESIDUE IPA H 404
41EC5SOFTWAREGLU I:49 , SER J:217 , HOH J:529BINDING SITE FOR RESIDUE CA I 401
42EC6SOFTWAREMET I:238 , GLN I:239 , HOH I:667 , HOH I:679BINDING SITE FOR RESIDUE EDO I 402
43EC7SOFTWAREGLY I:140 , SER I:141 , SER I:142 , SER J:278 , GLU J:279BINDING SITE FOR RESIDUE EDO I 403
44EC8SOFTWAREHIS I:154 , TYR I:225 , GLY I:226 , SER I:227 , HOH I:679BINDING SITE FOR RESIDUE IPA I 404
45EC9SOFTWARESER F:217 , HOH F:580 , HOH F:627 , HOH F:628 , GLU J:49BINDING SITE FOR RESIDUE CA J 401
46FC1SOFTWARETYR I:51 , TYR I:289 , GLN J:166 , LYS J:198 , SER J:217BINDING SITE FOR RESIDUE EDO J 402
47FC2SOFTWAREHOH F:688 , LEU J:101 , ASN J:102 , MET J:105 , GLY J:260 , ASP J:261BINDING SITE FOR RESIDUE EDO J 403
48FC3SOFTWAREMET J:238 , GLN J:239 , HOH J:620BINDING SITE FOR RESIDUE EDO J 404
49FC4SOFTWAREHIS J:154 , PHE J:156 , TYR J:225 , SER J:227 , HOH J:620BINDING SITE FOR RESIDUE IPA J 405
50FC5SOFTWARELEU A:65 , TYR A:68 , ASP A:71 , GLN A:133 , GLY A:134 , HIS A:274 , ASN A:276 , TYR A:277 , ASN A:282 , HOH A:515 , HOH A:518 , HOH A:565 , HOH A:575 , HOH A:592 , HOH A:632 , HOH A:648 , SER B:77 , LYS B:78BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 405 TO 407
51FC6SOFTWARETYR B:68 , ASP B:71 , GLN B:133 , GLY B:134 , HIS B:274 , ASN B:276 , TYR B:277 , ASN B:282 , HOH B:527 , HOH B:528 , HOH B:535 , HOH B:591 , HOH B:595 , HOH B:601 , HOH B:617 , HOH B:647 , HOH B:666 , HOH B:671 , HOH B:721 , SER C:76 , SER C:77 , LYS C:78BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 405 TO 407
52FC7SOFTWARELEU C:65 , TYR C:68 , ASP C:71 , GLN C:133 , GLY C:134 , HIS C:274 , ASN C:276 , TYR C:277 , ASN C:282 , HOH C:525 , HOH C:548 , HOH C:583 , HOH C:589 , HOH C:590 , HOH C:641 , HOH C:658 , HOH C:664 , HOH C:667 , HOH C:701 , HOH C:720 , HOH C:724 , HOH C:729 , SER D:76 , SER D:77 , LYS D:78 , HOH D:591 , ARG G:55 , ASN G:59 , ASN G:60 , PRO G:61 , ASP G:204BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 407 TO 409
53FC8SOFTWARELEU D:65 , TYR D:68 , ASP D:71 , GLN D:133 , GLY D:134 , HIS D:274 , ASN D:276 , TYR D:277 , ASN D:282 , HOH D:524 , HOH D:553 , HOH D:565 , HOH D:597 , HOH D:609 , HOH D:611 , HOH D:654 , HOH D:709 , HOH D:710 , HOH D:723 , SER E:76 , SER E:77 , LYS E:78 , HOH E:612 , MET G:105BINDING SITE FOR CHAIN D OF POLYSACCHARIDE RESIDUES 407 TO 409
54FC9SOFTWARESER A:76 , SER A:77 , LYS A:78 , HOH A:503 , LEU E:65 , TYR E:68 , ASP E:71 , GLN E:133 , GLY E:134 , HIS E:274 , ASN E:276 , TYR E:277 , ASN E:282 , HOH E:539 , HOH E:540 , HOH E:560 , HOH E:567 , HOH E:579 , HOH E:619 , HOH E:635 , HOH E:651 , HOH E:692 , GLU H:49 , HOH I:728BINDING SITE FOR CHAIN E OF POLYSACCHARIDE RESIDUES 405 TO 407
55GC1SOFTWARELEU F:65 , TYR F:68 , ASP F:71 , GLN F:133 , GLY F:134 , HIS F:274 , ASN F:276 , TYR F:277 , ASN F:282 , HOH F:517 , HOH F:524 , HOH F:532 , HOH F:568 , HOH F:570 , HOH F:589 , HOH F:592 , HOH F:593 , HOH F:633 , HOH F:644 , HOH F:645 , HOH F:703 , SER G:76 , SER G:77 , LYS G:78 , HOH G:718BINDING SITE FOR CHAIN F OF POLYSACCHARIDE RESIDUES 406 TO 408
56GC2SOFTWARELEU G:65 , TYR G:68 , ASP G:71 , GLN G:133 , GLY G:134 , HIS G:274 , ASN G:276 , TYR G:277 , ASN G:282 , HOH G:514 , HOH G:526 , HOH G:533 , HOH G:534 , HOH G:543 , HOH G:544 , HOH G:555 , HOH G:592 , HOH G:629 , HOH G:647 , HOH G:721 , SER H:76 , LYS H:78 , HOH H:698BINDING SITE FOR CHAIN G OF POLYSACCHARIDE RESIDUES 408 TO 410
57GC3SOFTWARELEU H:65 , TYR H:68 , ASP H:71 , GLN H:133 , GLY H:134 , HIS H:274 , ASN H:276 , TYR H:277 , ASN H:282 , HOH H:512 , HOH H:529 , HOH H:553 , HOH H:565 , HOH H:569 , HOH H:579 , HOH H:601 , HOH H:611 , HOH H:621 , HOH H:625 , HOH H:646 , HOH H:689 , SER I:76 , SER I:77 , LYS I:78BINDING SITE FOR CHAIN H OF POLYSACCHARIDE RESIDUES 405 TO 407
58GC4SOFTWARELEU I:65 , TYR I:68 , ASP I:71 , GLN I:133 , GLY I:134 , HIS I:274 , ASN I:276 , TYR I:277 , ASN I:282 , HOH I:515 , HOH I:516 , HOH I:545 , HOH I:554 , HOH I:567 , HOH I:590 , HOH I:642 , HOH I:643 , HOH I:690 , HOH I:706 , HOH I:720 , SER J:76 , SER J:77 , LYS J:78 , HOH J:606BINDING SITE FOR CHAIN I OF POLYSACCHARIDE RESIDUES 405 TO 407
59GC5SOFTWAREGLU B:103 , SER F:76 , SER F:77 , LYS F:78 , HOH F:529 , ASP H:108 , LEU J:65 , TYR J:68 , ASP J:71 , GLN J:133 , GLY J:134 , HIS J:274 , ASN J:276 , TYR J:277 , ASN J:282 , HOH J:521 , HOH J:549 , HOH J:550 , HOH J:560 , HOH J:564 , HOH J:574 , HOH J:635 , HOH J:636 , HOH J:664 , HOH J:719BINDING SITE FOR CHAIN J OF POLYSACCHARIDE RESIDUES 406 TO 408

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1B:107 -H:107
2D:107 -F:107

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4POT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4POT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4POT)

(-) Exons   (0, 0)

(no "Exon" information available for 4POT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4pota_ A: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot A  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102||     113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                                103|                                                                                                                                                                                                     
                                                                                                 105                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4potb_ B: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pot B  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4potc_ C: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot C  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102||     113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                                103|                                                                                                                                                                                                     
                                                                                                 105                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4potd_ D: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pot D  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain E from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4pote_ E: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot E  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                               102|                                                                                                                                                                                                      
                                                                                                104                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4potf_ F: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot F  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  


Chain G from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4potg_ G: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pot G  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain H from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4poth_ H: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pot H  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain I from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4poti_ I: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot I  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                               102|                                                                                                                                                                                                      
                                                                                                104                                                                                                                                                                                                      


Chain J from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4potj_ J: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pot J  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302
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Class: All beta proteins (24004)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E9NQ90_9POLY | E9NQ90: 4poq 4por 4pos

(-) Related Entries Specified in the PDB File

4fmi MERKEL CELL POLYOMAVIRUS VP1 IN COMPLEX WITH 3'- SIALYLLACTOSAMINE
4mbz STRUCTURE OF B-LYMPHOTROPIC POLYOMAVIRUS VP1 PENTAMER IN COMPLEX WITH 3'-SIALYLLACTOSAMINE
4poq
4por
4pos