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(-) Description

Title :  STRUCTURE OF UNLIGANDED VP1 PENTAMER OF HUMAN POLYOMAVIRUS 9
 
Authors :  Z. M. Khan, T. Stehle
Date :  26 Feb 14  (Deposition) - 09 Apr 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  F,G,H,I,J  (1x)
Keywords :  Jelly Roll Fold, Capsid Formation, Receptor Interaction, Carbohydrate, Sialyloligosaccharide, Viral Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. M. Khan, Y. Liu, U. Neu, M. Gilbert, B. Ehlers, T. Feizi, T. Stehle
Crystallographic And Glycan Microarray Analysis Of Human Polyomavirus 9 Vp1 Identifies N-Glycolyl Neuraminic Acid As A Receptor Candidate.
J. Virol. V. 88 6100 2014
PubMed-ID: 24648448  |  Reference-DOI: 10.1128/JVI.03455-13

(-) Compounds

Molecule 1 - VP1
    Chains: A, B, C, D, E, F, G, H, I, J
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 32-305
    Gene: GP3, VP1
    Organism Scientific: HUMAN POLYOMAVIRUS 9
    Organism Taxid: 943908
    Synonym: MAJOR CAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (1x): ABCDE     
Biological Unit 2 (1x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 31)

Asymmetric Unit (3, 31)
No.NameCountTypeFull Name
1CA10Ligand/IonCALCIUM ION
2EDO11Ligand/Ion1,2-ETHANEDIOL
3IPA10Ligand/IonISOPROPYL ALCOHOL
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO5Ligand/Ion1,2-ETHANEDIOL
3IPA5Ligand/IonISOPROPYL ALCOHOL
Biological Unit 2 (2, 11)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3IPA5Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:49 , HOH A:588 , HOH A:689 , SER B:217 , HOH B:674BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREHIS A:154 , MET A:238 , GLN A:239 , HOH A:614BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWAREHIS A:154 , PHE A:156 , GLY A:226 , SER A:227 , HOH A:614BINDING SITE FOR RESIDUE IPA A 403
04AC4SOFTWAREGLU B:49 , HOH B:695 , SER C:217 , HOH C:501 , HOH C:575BINDING SITE FOR RESIDUE CA B 401
05AC5SOFTWAREVAL B:122 , HIS B:154 , MET B:238 , GLN B:239 , HOH B:623 , HOH B:648BINDING SITE FOR RESIDUE EDO B 402
06AC6SOFTWAREPHE B:156 , TYR B:225 , SER B:227 , HOH B:648BINDING SITE FOR RESIDUE IPA B 403
07AC7SOFTWAREGLU C:49 , SER D:217 , HOH D:639 , HOH D:652BINDING SITE FOR RESIDUE CA C 401
08AC8SOFTWAREMET C:238 , GLN C:239 , HOH C:612 , HOH C:628BINDING SITE FOR RESIDUE EDO C 402
09AC9SOFTWAREHIS C:154 , PHE C:156 , GLY C:226 , SER C:227 , HOH C:612BINDING SITE FOR RESIDUE IPA C 403
10BC1SOFTWAREGLU D:49 , SER E:217 , HOH E:670BINDING SITE FOR RESIDUE CA D 401
11BC2SOFTWAREVAL D:122 , HIS D:154 , MET D:238 , GLN D:239 , HOH D:521 , HOH D:655BINDING SITE FOR RESIDUE EDO D 402
12BC3SOFTWAREHIS D:154 , PHE D:156 , TYR D:225 , SER D:227 , HOH D:655BINDING SITE FOR RESIDUE IPA D 403
13BC4SOFTWARESER A:217 , HOH A:695 , GLU E:49 , HOH E:681BINDING SITE FOR RESIDUE CA E 401
14BC5SOFTWAREHIS E:154 , MET E:238 , GLN E:239 , HOH E:566 , HOH E:635BINDING SITE FOR RESIDUE EDO E 402
15BC6SOFTWAREPHE E:156 , TYR E:225 , SER E:227 , HOH E:566BINDING SITE FOR RESIDUE IPA E 403
16BC7SOFTWAREGLU F:49 , HOH F:637 , HOH F:638 , SER G:217 , GLU G:220 , HOH G:659BINDING SITE FOR RESIDUE CA F 401
17BC8SOFTWAREMET F:238 , GLN F:239 , HOH F:578BINDING SITE FOR RESIDUE EDO F 402
18BC9SOFTWAREARG F:223 , TYR F:225 , VAL F:247 , LEU F:248 , LEU F:249 , HOH F:633 , SER J:243BINDING SITE FOR RESIDUE EDO F 403
19CC1SOFTWAREPHE F:156 , TYR F:225 , SER F:227BINDING SITE FOR RESIDUE IPA F 404
20CC2SOFTWAREGLU G:49 , SER H:217 , HOH H:681 , HOH H:682BINDING SITE FOR RESIDUE CA G 401
21CC3SOFTWAREVAL G:33 , HOH G:616 , HOH G:633BINDING SITE FOR RESIDUE EDO G 402
22CC4SOFTWAREVAL G:122 , HIS G:154 , MET G:238 , GLN G:239 , HOH G:529 , HOH G:614BINDING SITE FOR RESIDUE EDO G 403
23CC5SOFTWAREHIS G:154 , PHE G:156 , TYR G:225 , HOH G:529BINDING SITE FOR RESIDUE IPA G 404
24CC6SOFTWAREGLU H:49 , SER I:217 , GLU I:220 , HOH I:634 , HOH I:652 , HOH I:656BINDING SITE FOR RESIDUE CA H 401
25CC7SOFTWAREHIS H:154 , PHE H:156 , SER H:227 , HOH H:542BINDING SITE FOR RESIDUE IPA H 402
26CC8SOFTWAREGLU I:49 , HOH I:664 , SER J:217 , HOH J:562 , HOH J:650 , HOH J:656BINDING SITE FOR RESIDUE CA I 401
27CC9SOFTWAREMET I:238 , GLN I:239 , HOH I:590 , HOH I:645BINDING SITE FOR RESIDUE EDO I 402
28DC1SOFTWAREHIS I:154 , TYR I:225 , GLY I:226 , SER I:227 , HOH I:645BINDING SITE FOR RESIDUE IPA I 403
29DC2SOFTWARESER F:217 , HOH F:642 , HOH F:649 , GLU J:49BINDING SITE FOR RESIDUE CA J 401
30DC3SOFTWAREMET J:238 , GLN J:239 , HOH J:655BINDING SITE FOR RESIDUE EDO J 402
31DC4SOFTWAREPHE J:156 , SER J:227 , ARG J:288BINDING SITE FOR RESIDUE IPA J 403

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1A:107 -I:107
2C:107 -G:107
3D:107 -F:107

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4POQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4POQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4POQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4POQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4poqa_ A: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq A  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPY 303
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 


Chain B from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4poqb_ B: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4poq B  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain C from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                             
               SCOP domains d4poqc_ C: automated matches                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee..........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq C  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102|      113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293         
                                                                                               102|                                                                                                                                                                                                      
                                                                                                104                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4poqd_ D: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq D  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPY 303
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 


Chain E from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains d4poqe_ E: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4poq E  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302


Chain F from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4poqf_ F: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq F  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302  


Chain G from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4poqg_ G: automated matches                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq G  33 VEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPY 303
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302 


Chain H from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4poqh_ H: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee....eeee...................hhhhhh.....eee...........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq H  31 GGVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300    


Chain I from PDB  Type:PROTEIN  Length:272
                                                                                                                                                                                                                                                                                                                
               SCOP domains d4poqi_ I: automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq I  31 GGVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNP 302
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300  


Chain J from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4poqj_ J: automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......eeeeeeee...............................hhhhh...eeeeee...........eeeeeeeeeeeeee.hhhhhh......................eeeeeeee...eeeee...................hhhhhh.....eeee..........eee.......eeeeeeee.......eeeee....ee..........hhh.eeeeeeeeeeeeee.....eeeee..eeeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4poq J  32 GVEVLEVRTGPDAITQIEAYLNPRMGNNNPTDELYGYSADINVASSKASDNPNATTLPTYSVAVIKLPMLNEDMTCDTLLMWEAVSVKTEVMGISSLVNLHQGGKYIYGSSSGTIPVQGTTLHMFSVGGEPLELQGLVASSTTTYPTDMVTIKNMKPVNQALDPNAKALLDKDGKYPVEVWSPDPSKNENTRYYGSFTGGATTPPVMQFTNSVTTVLLDENGVGPLCKGDKLFLSAVDIVGIHTNYSESQNWRGLPRYFNVTLRKRVVKNPYP 304
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4POQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4POQ)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E9NQ90_9POLY | E9NQ90: 4por 4pos 4pot

(-) Related Entries Specified in the PDB File

4fmg MERKEL CELL POLYOMAVIRUS VP1 UNASSEMBLED PENTAMER
4mbx STRUCTURE OF UNLIGANDED B-LYMPHTROPIC POLYOMAVIRUS VP1 PENTAMER
4por
4pos
4pot