Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF A GNAT SUPERFAMILY ACETYLTRANSFERASE PA4794 C29A/C117A/Y128A MUTANT IN COMPLEX WITH CHLORAMPHENICOL
 
Authors :  K. A. Majorek, M. Chruszcz, A. Joachimiak, W. Minor, Midwest Center F Structural Genomics (Mcsg)
Date :  04 Jan 14  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Gnat, Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. A. Majorek, M. Chruszcz, A. Joachimiak, W. Minor
Crystal Structure Of A Gnat Superfamily Acetyltransferase Pa4794 C29A/C117A/Y128A Mutant In Complex With Chloramphenicol
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GNAT SUPERFAMILY ACETYLTRANSFERASE PA4794
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP11
    Expression System StrainBL21(DE3) RIL
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePA4794
    MutationYES
    Organism ScientificPSEUDOMONAS AERUGINOSA
    Organism Taxid208964
    StrainPAO1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A
Biological Unit 2 (2x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
1CLM2Ligand/IonCHLORAMPHENICOL
2EDO8Ligand/Ion1,2-ETHANEDIOL
3SO46Ligand/IonSULFATE ION
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1CLM2Ligand/IonCHLORAMPHENICOL
2EDO8Ligand/Ion1,2-ETHANEDIOL
3SO46Ligand/IonSULFATE ION
Biological Unit 2 (3, 32)
No.NameCountTypeFull Name
1CLM4Ligand/IonCHLORAMPHENICOL
2EDO16Ligand/Ion1,2-ETHANEDIOL
3SO412Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:89 , LEU A:90 , GLY A:91 , VAL A:92 , ALA A:93 , ARG A:94 , LEU A:127 , EDO A:209 , HOH A:304 , HOH A:355 , HOH A:539BINDING SITE FOR RESIDUE SO4 A 201
02AC2SOFTWAREGLN A:60 , ARG A:141 , HIS A:142 , HOH A:413 , HOH A:448 , HOH A:468BINDING SITE FOR RESIDUE SO4 A 202
03AC3SOFTWAREARG A:50 , GLY A:51 , HOH A:335 , HOH A:378 , HOH A:478 , HOH A:507BINDING SITE FOR RESIDUE SO4 A 203
04AC4SOFTWAREARG A:50 , TRP A:70 , HOH A:430 , HOH A:442BINDING SITE FOR RESIDUE SO4 A 204
05AC5SOFTWAREALA A:139 , ARG A:141 , GLN A:153 , HOH A:408BINDING SITE FOR RESIDUE SO4 A 205
06AC6SOFTWAREGLN A:134 , ARG A:136 , HOH A:353BINDING SITE FOR RESIDUE SO4 A 206
07AC7SOFTWAREPHE A:19 , PRO A:20 , GLU A:25 , TYR A:28 , MET A:81 , MET A:82 , VAL A:83 , ARG A:88 , ASN A:121 , GLY A:124 , EDO A:209 , EDO A:210 , HOH A:341 , HOH A:488BINDING SITE FOR RESIDUE CLM A 207
08AC8SOFTWAREMET A:1 , ALA A:40 , ALA A:44 , ALA A:47 , GLN A:60 , LEU A:62 , ALA A:86 , EDO A:212 , HOH A:321 , HOH A:490BINDING SITE FOR RESIDUE CLM A 208
09AC9SOFTWAREARG A:88 , GLY A:89 , ALA A:93 , SO4 A:201 , CLM A:207BINDING SITE FOR RESIDUE EDO A 209
10BC1SOFTWAREMET A:81 , ASN A:121 , GLY A:124 , CLM A:207 , HOH A:366BINDING SITE FOR RESIDUE EDO A 210
11BC2SOFTWAREALA A:8 , GLU A:9 , THR A:10 , ILE A:46 , EDO A:213 , HOH A:362 , HOH A:439BINDING SITE FOR RESIDUE EDO A 211
12BC3SOFTWARELEU A:13 , PRO A:85 , ALA A:86 , ALA A:87 , ARG A:88 , CLM A:208 , HOH A:362BINDING SITE FOR RESIDUE EDO A 212
13BC4SOFTWAREGLU A:9 , THR A:10 , EDO A:211 , HOH A:323BINDING SITE FOR RESIDUE EDO A 213
14BC5SOFTWAREALA A:17 , GLY A:18 , PHE A:37 , SER A:38 , HIS A:72 , LYS A:109 , ARG A:111 , HOH A:328 , HOH A:352 , HOH A:388 , HOH A:531BINDING SITE FOR RESIDUE EDO A 214
15BC6SOFTWAREGLY A:18 , GLN A:21 , ARG A:105 , ARG A:111 , HOH A:403 , HOH A:500BINDING SITE FOR RESIDUE EDO A 215
16BC7SOFTWAREARG A:23 , ASP A:24 , ASP A:143 , HOH A:384 , HOH A:445BINDING SITE FOR RESIDUE EDO A 216

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OAE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Trp A:35 -Pro A:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OAE)

(-) Exons   (0, 0)

(no "Exon" information available for 4OAE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains d4oaea_ A: Putative acetyltransferase PA4794                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhheeeeeeee..eeeeeeeeeeee...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oae A   0 HMQLSHRPAETGDLETVAGFPQDRDELFYAYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISAFNANAAGLLLATQLGYQPRAIAERHDPDGRRVALIQMDKPLE 159
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OAE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OAE)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CLM  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Trp A:35 - Pro A:36   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4oae
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9HV14_PSEAE | Q9HV14
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q9HV14_PSEAE | Q9HV14
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HV14_PSEAE | Q9HV143kkw 3pgp 4klv 4klw 4kor 4kos 4kot 4kou 4kov 4kow 4kox 4koy 4kua 4kub 4l89 4l8a 4m3s 4oad

(-) Related Entries Specified in the PDB File

3pgp IN COMPLEX WITH ACCOA
4kua APO FORM
4kub IN COMPLEX WITH COA
4l8a IN TERNARY COMPLEX WITH N-PHENYLACETYL-GLY-ACLYS AND COA
4oad WT IN COMPLEX WITH CHLORAMPHENICOL RELATED ID: MCSG-APC102304 RELATED DB: TARGETTRACK