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(-) Description

Title :  CRYSTAL STRUCTURE OF A GNAT SUPERFAMILY ACETYLTRANSFERASE PA4794 IN TERNARY COMPLEX WITH N-PHENYLACETYL-GLY-ACLYS AND COA
 
Authors :  K. A. Majorek, M. Chruszcz, A. Joachimiak, W. Minor, Midwest Center F Structural Genomics (Mcsg)
Date :  16 Jun 13  (Deposition) - 10 Jul 13  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Gnat, Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. A. Majorek, M. L. Kuhn, M. Chruszcz, W. F. Anderson, W. Minor
Structural, Functional, And Inhibition Studies Of A Gcn5-Related N-Acetyltransferase (Gnat) Superfamily Protein Pa4794: A New C-Terminal Lysine Protein Acetyltransferase From Pseudomonas Aeruginosa.
J. Biol. Chem. V. 288 30223 2013
PubMed-ID: 24003232  |  Reference-DOI: 10.1074/JBC.M113.501353

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P11
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PA4794
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 13)

Asymmetric/Biological Unit (4, 13)
No.NameCountTypeFull Name
11VP1Ligand/IonN-(PHENYLACETYL)GLYCYL-N~6~-ACETYL-L-LYSINE
2COA1Ligand/IonCOENZYME A
3EDO6Ligand/Ion1,2-ETHANEDIOL
4SO45Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:24 , ASP A:143 , HOH A:348BINDING SITE FOR RESIDUE EDO A 201
02AC2SOFTWAREGLN A:134 , ARG A:136 , HOH A:365 , HOH A:473BINDING SITE FOR RESIDUE EDO A 202
03AC3SOFTWARESER A:38 , GLN A:41 , HOH A:325 , HOH A:564BINDING SITE FOR RESIDUE EDO A 203
04AC4SOFTWAREGLY A:11 , GLU A:14 , TYR A:28 , CYS A:29 , MET A:81 , MET A:82 , VAL A:83 , ARG A:88 , GLY A:89 , LEU A:90 , GLY A:91 , VAL A:92 , ALA A:93 , ARG A:94 , SER A:116 , ASN A:121 , ALA A:123 , LEU A:126 , LEU A:127 , TYR A:128 , GLN A:130 , ARG A:148 , 1VP A:210 , HOH A:304 , HOH A:316 , HOH A:403 , HOH A:421 , HOH A:423 , HOH A:436 , HOH A:471 , HOH A:480 , HOH A:500 , HOH A:514 , HOH A:515 , HOH A:516 , HOH A:517 , HOH A:518 , HOH A:519 , HOH A:520 , HOH A:521 , HOH A:544 , HOH A:549 , HOH A:551 , HOH A:552 , HOH A:554 , HOH A:555 , HOH A:556 , HOH A:557 , HOH A:558 , HOH A:559 , HOH A:560 , HOH A:569 , HOH A:578 , HOH A:579BINDING SITE FOR RESIDUE COA A 204
05AC5SOFTWAREARG A:50 , GLY A:51 , HOH A:338 , HOH A:408 , HOH A:494BINDING SITE FOR RESIDUE SO4 A 205
06AC6SOFTWAREGLY A:89 , LEU A:90 , GLY A:91 , VAL A:92 , ALA A:93 , ARG A:94 , LEU A:127 , HOH A:403 , HOH A:544 , HOH A:556 , HOH A:557 , HOH A:579BINDING SITE FOR RESIDUE SO4 A 206
07AC7SOFTWAREGLN A:60 , ARG A:141 , HIS A:142 , 1VP A:210 , HOH A:474 , HOH A:504 , HOH A:512 , HOH A:529BINDING SITE FOR RESIDUE SO4 A 207
08AC8SOFTWAREGLN A:60 , LEU A:62 , ALA A:86 , ALA A:87 , LEU A:90 , HOH A:540BINDING SITE FOR RESIDUE SO4 A 208
09AC9SOFTWAREALA A:139 , ARG A:141 , GLN A:153 , HOH A:415 , HOH A:470BINDING SITE FOR RESIDUE SO4 A 209
10BC1SOFTWARETYR A:28 , CYS A:29 , PRO A:31 , LYS A:32 , ARG A:49 , TYR A:68 , LEU A:78 , GLY A:79 , ASN A:80 , MET A:81 , SER A:116 , TYR A:128 , ARG A:141 , HIS A:142 , LEU A:151 , COA A:204 , SO4 A:207 , HOH A:328 , HOH A:330 , HOH A:492 , HOH A:493 , HOH A:509 , HOH A:510 , HOH A:511 , HOH A:512 , HOH A:513 , HOH A:550 , HOH A:551 , HOH A:570 , HOH A:580BINDING SITE FOR RESIDUE 1VP A 210
11BC2SOFTWAREGLU A:14 , ALA A:17 , GLY A:18 , PHE A:37 , HIS A:72 , ARG A:111 , HOH A:324 , HOH A:352 , HOH A:531BINDING SITE FOR RESIDUE EDO A 211
12BC3SOFTWAREARG A:50 , TRP A:70 , HOH A:372 , HOH A:485 , HOH A:563BINDING SITE FOR RESIDUE EDO A 212
13BC4SOFTWAREALA A:8 , LEU A:13 , HOH A:382BINDING SITE FOR RESIDUE EDO A 213

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L8A)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Trp A:35 -Pro A:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L8A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L8A)

(-) Exons   (0, 0)

(no "Exon" information available for 4L8A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains d4l8aa_ A: Putative acetyltransferase PA4794                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhheeeeeeee..eeeeeeeeeeee...eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeeeeee.....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l8a A   1 MQLSHRPAETGDLETVAGFPQDRDELFYCYPKAIWPFSVAQLAAAIAERRGSTVAVHDGQVLGFANFYQWQHGDFCALGNMMVAPAARGLGVARYLIGVMENLAREQYKARLMKISCFNANAAGLLLYTQLGYQPRAIAERHDPDGRRVALIQMDKPLE 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L8A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L8A)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HV14_PSEAE | Q9HV14: 3kkw 3pgp 4klv 4klw 4kor 4kos 4kot 4kou 4kov 4kow 4kox 4koy 4kua 4kub 4l89 4m3s 4oad 4oae

(-) Related Entries Specified in the PDB File

4koy IN COMPLEX WITH CEPHALOSPORIN C
3pgp IN COMPLEX WITH ACCOA
4klv IN COMPLEX WITH 4-METHYLUMBELLIFERYL PHOSPHATE
4klw IN COMPLEX WITH 2 (AMINOCARBONYL)BENZOATE
4kor IN COMPLEX WITH 7 AMINOCEPHALOSPORANIC ACID
4kos IN COMPLEX WITH CEFMETAZOLE
4kot IN COMPLEX WITH CEFOTAXIME
4kou IN COMPLEX WITH CEFIXIME
4kov IN COMPLEX WITH CEFUROXIME
4kow IN COMPLEX WITH CEFOXITIN
4kox IN COMPLEX WITH CEFALOTIN
4kua APO FORM
4kub IN COMPLEX WITH COA
4l89 IN COMPLEX WITH COVALENTLY BOUND COA RELATED ID: MCSG-APC102304 RELATED DB: TARGETTRACK