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4O3A
Biol. Unit 3
Info
Asym.Unit (283 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN IN COMPLEX WITH L-ASPARTATE AT 1.80 A RESOLUTION
Authors
:
C. Krintel, F. Frydenvang, M. Gajhede, J. S. Kastrup
Date
:
18 Dec 13 (Deposition) - 16 Apr 14 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Membrane Protein-Agonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Krintel, K. Frydenvang, A. Ceravalls De Rabassa, A. M. Kaern, M. Gajhede, D. S. Pickering, J. S. Kastrup
L-Asp Is A Useful Tool In The Purification Of The Ionotropi Glutamate Receptor A2 Ligand-Binding Domain.
Febs J. V. 281 2422 2014
(for further references see the
PDB file header
)
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
2a: ASPARTIC ACID (ASPa)
2b: ASPARTIC ACID (ASPb)
2c: ASPARTIC ACID (ASPc)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
6
Ligand/Ion
ACETATE ION
2
ASP
1
Mod. Amino Acid
ASPARTIC ACID
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
2
Ligand/Ion
GLYCEROL
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(20, 20)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC8 (SOFTWARE)
03: BC6 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC4 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC8 (SOFTWARE)
08: CC9 (SOFTWARE)
09: DC1 (SOFTWARE)
10: DC2 (SOFTWARE)
11: DC3 (SOFTWARE)
12: DC4 (SOFTWARE)
13: DC5 (SOFTWARE)
14: DC6 (SOFTWARE)
15: DC7 (SOFTWARE)
16: DC8 (SOFTWARE)
17: DC9 (SOFTWARE)
18: EC1 (SOFTWARE)
19: EC2 (SOFTWARE)
20: EC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
HIS A:23 , GLU A:30 , ACT A:308 , HIS C:23
BINDING SITE FOR RESIDUE ZN A 303
02
AC8
SOFTWARE
LYS A:20 , HIS A:23 , GLU A:30 , ZN A:303 , HIS C:23 , GLU C:24
BINDING SITE FOR RESIDUE ACT A 308
03
BC6
SOFTWARE
HIS B:23 , ASP C:65 , ASP C:67 , ACT C:309 , HOH C:559
BINDING SITE FOR RESIDUE ZN B 302
04
CC3
SOFTWARE
ASP B:248 , ASP C:216 , SER C:217
BINDING SITE FOR RESIDUE GOL B 308
05
CC4
SOFTWARE
HIS B:46 , LEU B:236 , LYS B:240 , HOH B:445 , GLU C:98
BINDING SITE FOR RESIDUE PEG B 309
06
CC6
SOFTWARE
ASN B:232 , LEU B:236 , HOH B:444 , GLU C:97 , GLU C:98 , LYS C:226
BINDING SITE FOR RESIDUE PEG B 311
07
CC8
SOFTWARE
TYR C:61 , PRO C:89 , LEU C:90 , THR C:91 , ARG C:96 , GLY C:141 , SER C:142 , THR C:143 , GLU C:193 , HOH C:403 , HOH C:444
BINDING SITE FOR RESIDUE ASP C 301
08
CC9
SOFTWARE
GLU C:42 , LYS C:45 , HIS C:46
BINDING SITE FOR RESIDUE ZN C 302
09
DC1
SOFTWARE
GLU B:24 , ASP C:139 , SER C:140 , ACT C:307 , HOH C:553
BINDING SITE FOR RESIDUE ZN C 303
10
DC2
SOFTWARE
HIS C:46 , LYS C:240 , HOH C:480 , HOH C:552
BINDING SITE FOR RESIDUE ZN C 304
11
DC3
SOFTWARE
ASP C:156 , HOH C:560
BINDING SITE FOR RESIDUE ZN C 305
12
DC4
SOFTWARE
SER B:217 , HOH B:465 , HOH B:579 , PRO C:105 , SER C:108
BINDING SITE FOR RESIDUE ACT C 306
13
DC5
SOFTWARE
GLU B:24 , ALA C:63 , ARG C:64 , ASN C:72 , ASP C:139 , SER C:140 , ZN C:303 , HOH C:528
BINDING SITE FOR RESIDUE ACT C 307
14
DC6
SOFTWARE
ASN B:214 , ASP B:216 , SER B:217 , ASP C:248 , HOH C:557
BINDING SITE FOR RESIDUE ACT C 308
15
DC7
SOFTWARE
MET B:19 , HIS B:23 , ZN B:302 , ASP C:65 , ASP C:67
BINDING SITE FOR RESIDUE ACT C 309
16
DC8
SOFTWARE
ARG C:180 , LYS C:187 , TYR C:188
BINDING SITE FOR RESIDUE ACT C 310
17
DC9
SOFTWARE
LYS B:151 , LYS C:20 , GLU C:30
BINDING SITE FOR RESIDUE ACT C 311
18
EC1
SOFTWARE
PRO B:105 , SER B:108 , ASN B:242 , HOH B:406 , SER C:217 , HOH C:514
BINDING SITE FOR RESIDUE GOL C 312
19
EC2
SOFTWARE
GLU B:27 , ASP C:139 , SER C:168 , PHE C:170 , VAL C:171 , ARG C:172 , HOH C:476 , HOH C:511 , HOH C:576
BINDING SITE FOR RESIDUE GOL C 313
20
EC3
SOFTWARE
ARG C:64 , TRP C:71 , VAL C:99 , GLY C:118 , HOH C:472 , HOH C:495 , HOH C:506
BINDING SITE FOR RESIDUE PEG C 314
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain C
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Show PDB file:
Asym.Unit (283 KB)
Header - Asym.Unit
Biol.Unit 1 (185 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
Biol.Unit 3 (94 KB)
Header - Biol.Unit 3
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