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4O3A
Biol. Unit 2
Info
Asym.Unit (283 KB)
Biol.Unit 1 (185 KB)
Biol.Unit 2 (96 KB)
Biol.Unit 3 (94 KB)
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Title
:
CRYSTAL STRUCTURE OF THE GLUA2 LIGAND-BINDING DOMAIN IN COMPLEX WITH L-ASPARTATE AT 1.80 A RESOLUTION
Authors
:
C. Krintel, F. Frydenvang, M. Gajhede, J. S. Kastrup
Date
:
18 Dec 13 (Deposition) - 16 Apr 14 (Release) - 31 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (2x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ampa Receptor Ligand-Binding Domain, Membrane Protein-Agonist Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Krintel, K. Frydenvang, A. Ceravalls De Rabassa, A. M. Kaern, M. Gajhede, D. S. Pickering, J. S. Kastrup
L-Asp Is A Useful Tool In The Purification Of The Ionotropi Glutamate Receptor A2 Ligand-Binding Domain.
Febs J. V. 281 2422 2014
(for further references see the
PDB file header
)
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
1j: ACETATE ION (ACTj)
2a: ASPARTIC ACID (ASPa)
2b: ASPARTIC ACID (ASPb)
2c: ASPARTIC ACID (ASPc)
3a: CHLORIDE ION (CLa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
6c: ZINC ION (ZNc)
6d: ZINC ION (ZNd)
6e: ZINC ION (ZNe)
6f: ZINC ION (ZNf)
6g: ZINC ION (ZNg)
6h: ZINC ION (ZNh)
6i: ZINC ION (ZNi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
ASP
1
Mod. Amino Acid
ASPARTIC ACID
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
GOL
4
Ligand/Ion
GLYCEROL
5
PEG
3
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(21, 21)
Info
All Sites
01: AC4 (SOFTWARE)
02: BC5 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC9 (SOFTWARE)
20: EC1 (SOFTWARE)
21: EC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
GLU A:42 , HIS A:46 , LEU A:241 , HOH A:635 , GLU B:166
BINDING SITE FOR RESIDUE ZN A 304
02
BC5
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , THR B:91 , ARG B:96 , LEU B:138 , GLY B:141 , SER B:142 , THR B:143 , GLU B:193 , MET B:196 , HOH B:416 , HOH B:575 , HOH B:583
BINDING SITE FOR RESIDUE ASP B 301
03
BC6
SOFTWARE
HIS B:23 , ASP C:65 , ASP C:67 , ACT C:309 , HOH C:559
BINDING SITE FOR RESIDUE ZN B 302
04
BC7
SOFTWARE
GLU A:166 , GLU B:42 , HIS B:46 , HOH B:573
BINDING SITE FOR RESIDUE ZN B 303
05
BC8
SOFTWARE
ARG B:180 , SER B:184 , LYS B:187
BINDING SITE FOR RESIDUE ACT B 304
06
BC9
SOFTWARE
LYS B:69 , TYR B:80 , GLY B:118 , LYS B:185 , HOH B:460 , HOH B:555
BINDING SITE FOR RESIDUE GOL B 305
07
CC1
SOFTWARE
ILE B:70 , TYR B:80 , LYS B:116 , LYS B:185 , HOH B:460
BINDING SITE FOR RESIDUE GOL B 306
08
CC2
SOFTWARE
GLU B:201 , LYS B:210
BINDING SITE FOR RESIDUE GOL B 307
09
CC3
SOFTWARE
ASP B:248 , ASP C:216 , SER C:217
BINDING SITE FOR RESIDUE GOL B 308
10
CC4
SOFTWARE
HIS B:46 , LEU B:236 , LYS B:240 , HOH B:445 , GLU C:98
BINDING SITE FOR RESIDUE PEG B 309
11
CC5
SOFTWARE
ARG B:64 , TRP B:71 , GLY B:118 , HOH B:496 , HOH B:520 , HOH B:593
BINDING SITE FOR RESIDUE PEG B 310
12
CC6
SOFTWARE
ASN B:232 , LEU B:236 , HOH B:444 , GLU C:97 , GLU C:98 , LYS C:226
BINDING SITE FOR RESIDUE PEG B 311
13
CC7
SOFTWARE
LYS B:4 , GLY B:262 , SER B:263
BINDING SITE FOR RESIDUE CL B 312
14
DC1
SOFTWARE
GLU B:24 , ASP C:139 , SER C:140 , ACT C:307 , HOH C:553
BINDING SITE FOR RESIDUE ZN C 303
15
DC4
SOFTWARE
SER B:217 , HOH B:465 , HOH B:579 , PRO C:105 , SER C:108
BINDING SITE FOR RESIDUE ACT C 306
16
DC5
SOFTWARE
GLU B:24 , ALA C:63 , ARG C:64 , ASN C:72 , ASP C:139 , SER C:140 , ZN C:303 , HOH C:528
BINDING SITE FOR RESIDUE ACT C 307
17
DC6
SOFTWARE
ASN B:214 , ASP B:216 , SER B:217 , ASP C:248 , HOH C:557
BINDING SITE FOR RESIDUE ACT C 308
18
DC7
SOFTWARE
MET B:19 , HIS B:23 , ZN B:302 , ASP C:65 , ASP C:67
BINDING SITE FOR RESIDUE ACT C 309
19
DC9
SOFTWARE
LYS B:151 , LYS C:20 , GLU C:30
BINDING SITE FOR RESIDUE ACT C 311
20
EC1
SOFTWARE
PRO B:105 , SER B:108 , ASN B:242 , HOH B:406 , SER C:217 , HOH C:514
BINDING SITE FOR RESIDUE GOL C 312
21
EC2
SOFTWARE
GLU B:27 , ASP C:139 , SER C:168 , PHE C:170 , VAL C:171 , ARG C:172 , HOH C:476 , HOH C:511 , HOH C:576
BINDING SITE FOR RESIDUE GOL C 313
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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Asym.Unit (283 KB)
Header - Asym.Unit
Biol.Unit 1 (185 KB)
Header - Biol.Unit 1
Biol.Unit 2 (96 KB)
Header - Biol.Unit 2
Biol.Unit 3 (94 KB)
Header - Biol.Unit 3
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