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(-) Description

Title :  SPOP PROMOTES TUMORIGENESIS BY ACTING AS A KEY REGULATORY HUB IN KIDNEY CANCER
 
Authors :  M. F. Calabrese, E. R. Watson, B. A. Schulman
Date :  16 Dec 13  (Deposition) - 30 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ubl Conjugation Pathway, Ligase, Ubiquitin, E3, Spop, Math, Pten, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Li, W. Ci, S. Karmakar, K. Chen, R. Dhar, Z. Fan, Z. Guo, J. Zhang, Y. Ke L. Wang, M. Zhuang, S. Hu, X. Li, L. Zhou, X. Li, M. F. Calabrese, E. R. Watson, S. M. Prasad, C. Rinker-Schaeffer, S. E. Eggener, T. Stricker, Y. Tian, B. A. Schulman, J. Liu, K. P. White
Spop Promotes Tumorigenesis By Acting As A Key Regulatory Hub In Kidney Cancer.
Cancer Cell V. 25 455 2014
PubMed-ID: 24656772  |  Reference-DOI: 10.1016/J.CCR.2014.02.007

(-) Compounds

Molecule 1 - SPECKLE-TYPE POZ PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: MATH DOMAIN (UNP RESIDUES 28-166)
    Gene: SPOP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HIB HOMOLOG 1, ROADKILL HOMOLOG 1
 
Molecule 2 - PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 354-368
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MUTATED IN MULTIPLE ADVANCED CANCERS 1, PHOSPHATASE AND TENSIN HOMOLOG
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4O1V)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:87 , VAL A:91 , GLU A:118 , TYR A:123 , LYS A:129 , ASP A:130 , TRP A:131 , GLY A:132 , PHE A:133 , HOH A:253 , HOH B:401 , HOH B:402 , HOH B:403 , HOH B:404 , HOH B:405 , HOH B:406BINDING SITE FOR CHAIN B OF PTEN PEPTIDE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O1V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O1V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O1V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O1V)

(-) Exons   (0, 0)

(no "Exon" information available for 4O1V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee.hhhhh.......ee...eee.....eeeeeeee..........eeeeeeeeee.....eeeeeeeeee.....eeeeee....eee....eeeeeeeeehhhhhhhhhh.hhhhheeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1v A  26 SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 166
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165 


Chain B from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4o1v B 357 PEASSST 363
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O1V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O1V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O1V)

(-) Gene Ontology  (143, 146)

Asymmetric/Biological Unit(hide GO term definitions)

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  4o1v
    Family and Domain Information: ProDom | SYSTERS
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  PTEN_HUMAN | P60484
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  SPOP_HUMAN | O43791
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PTEN_HUMAN | P60484: 1d5r 2kyl 5bug 5bzx 5bzz
        SPOP_HUMAN | O43791: 2cr2 3hqh 3hqi 3hql 3hqm 3hsv 3htm 3hu6 3ivb 3ivq 3ivv 4eoz 4hs2 4j8z

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4O1V)