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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN SPOP BTB DOMAIN
 
Authors :  M. A. Stead, S. C. Wright
Date :  15 Feb 13  (Deposition) - 11 Sep 13  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Btb Domain, Back Domain, Protein Ubiquitination, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. K. Geersdaele, M. A. Stead, C. M. Harrison, S. B. Carr, H. J. Close, G. O. Rosbrook, S. D. Connell, S. C. Wright
Structural Basis Of High-Order Oligomerization Of The Cullin-3 Adaptor Spop
Acta Crystallogr. , Sect. D V. 69 1677 2013
PubMed-ID: 23999291  |  Reference-DOI: 10.1107/S0907444913012687

(-) Compounds

Molecule 1 - SPECKLE-TYPE POZ PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-6P-1
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SPOP BTB DOMAIN, UNP RESIDUES 178-374
    Gene: SPOP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HIB HOMOLOG 1, ROADKILL HOMOLOG 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4J8Z)

(-) Sites  (0, 0)

(no "Site" information available for 4J8Z)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J8Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4J8Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J8Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J8Z)

(-) Exons   (0, 0)

(no "Exon" information available for 4J8Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8z A 178 MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAERSL 356
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347         


Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh.....eeeee..eeeeehhhhhhhhhhhhhhhhhhh.......eeee...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j8z B 178 MVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSMVVSHPHLVAEAER 354
                                   187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J8Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J8Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J8Z)

(-) Gene Ontology  (8, 8)

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  SPOP_HUMAN | O43791
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPOP_HUMAN | O43791: 2cr2 3hqh 3hqi 3hql 3hqm 3hsv 3htm 3hu6 3ivb 3ivq 3ivv 4eoz 4hs2 4o1v

(-) Related Entries Specified in the PDB File

4hs2 CRYSTAL STRUCTURE OF THE HUMAN SPOP C-TERMINAL DOMAIN