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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN PHOSPHATASE PTEN OXIDIZED BY H2O2
 
Authors :  C. -U. Lee, D. Bier, S. Hennig, T. N. Grossmann
Date :  03 Jun 15  (Deposition) - 07 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Hydrolase, C2 Domain, Disulfide, Oxidized (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. U. Lee, G. Hahne, J. Hanske, T. Bange, D. Bier, C. Rademacher, S. Hennig, T. N. Grossmann
Redox Modulation Of Pten Phosphatase Activity By Hydrogen Peroxide And Bisperoxidovanadium Complexes.
Angew. Chem. Int. Ed. Engl. V. 54 13796 2015
PubMed-ID: 26418532  |  Reference-DOI: 10.1002/ANIE.201506338

(-) Compounds

Molecule 1 - PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND DUAL-SPECIFICITY PROTEIN PHOSPHATASE PTEN
    Chains: A, B, C, D
    EC Number: 3.1.3.16, 3.1.3.48, 3.1.3.67
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFH1
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: PTEN WT 14-351 DELTA 286-309
    Gene: PTEN, MMAC1, TEP1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MUTATED IN MULTIPLE ADVANCED CANCERS 1,PHOSPHATASE AND TENSIN HOMOLOG

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1TLA4Ligand/IonL(+)-TARTARIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1TLA1Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:92 , HIS A:93 , CYS A:124 , LYS A:125 , ALA A:126 , GLY A:127 , LYS A:128 , GLY A:129 , ARG A:130 , THR A:131 , HOH A:544 , HOH A:561 , HOH A:574binding site for residue TLA A 401
2AC2SOFTWAREASP B:92 , CYS B:124 , LYS B:125 , ALA B:126 , GLY B:127 , LYS B:128 , GLY B:129 , ARG B:130 , THR B:131 , GLN B:171 , HOH B:564binding site for residue TLA B 401
3AC3SOFTWAREASP C:92 , HIS C:93 , LYS C:125 , ALA C:126 , GLY C:127 , LYS C:128 , GLY C:129 , ARG C:130 , THR C:131 , GLN C:171binding site for residue TLA C 401
4AC4SOFTWAREASP D:92 , HIS D:93 , CYS D:124 , LYS D:125 , ALA D:126 , GLY D:127 , LYS D:128 , GLY D:129 , ARG D:130 , THR D:131 , GLN D:171 , HOH D:503 , HOH D:513binding site for residue TLA D 401

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:71 -A:124
2B:71 -B:124
3C:71 -C:124
4D:71 -D:124

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile B:280 -Pro B:281

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BUG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BUG)

(-) Exons   (0, 0)

(no "Exon" information available for 5BUG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.............hhhhhhhhhhhhh...eeeeeee.....hhhhh...eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.......eeeeeeeee............eeeeeee..eeeee......eee..eeeeeeeeeeeee.eeeeeeee........eeeeeeeee.hhh...........eeeeee.hhh.hhhhh..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bug A  14 RRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTV 351
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283 ||    317       327       337       347    
                                                                                                                                                                                                                                                                                                         285|                                         
                                                                                                                                                                                                                                                                                                          310                                         


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eee..ee................hhhhhhhhhhhhh..eeeeeee.....hhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.......eeeeeeeee............eeeeeee..eeeee......eee..eeeeeeeeeeeee.eeeeeeeee......eeeeeeeeee.hhh...........eeeeee.hhh.hhhhh..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bug B  14 RRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTV 351
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283 ||    317       327       337       347    
                                                                                                                                                                                                                                                                                                         285|                                         
                                                                                                                                                                                                                                                                                                          310                                         


Chain C from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.............hhhhhhhhhhhhh...eeeeeee.....hhhhh...eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.......eeeeeeeee............eeeeeee..eeeee......eee..eeeeeeeeeeeee.eeeeeeee........eeeeeeeee.hhh...........eeeeee.hhh.hhhhh..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bug C  14 RRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTV 351
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283 ||    317       327       337       347    
                                                                                                                                                                                                                                                                                                         285|                                         
                                                                                                                                                                                                                                                                                                          310                                         


Chain D from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee..eeee.............hhhhhhhhhhhhh...eeeeeee.....hhhhh...eeeeee......hhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh.......eeeeeeeee............eeeeeee..eeeee......eee..eeeeeeeeeeeee.eeeeeeeee......eeeeeeeeee.hhh...........eeeeee.hhh.hhhhh..........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bug D  14 RRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYDTAKFNCRVAQYPFEDHNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLLHRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFIPGPEEDNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKTV 351
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283 ||    317       327       337       347    
                                                                                                                                                                                                                                                                                                         285|                                         
                                                                                                                                                                                                                                                                                                          310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BUG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BUG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BUG)

(-) Gene Ontology  (138, 138)

Asymmetric Unit(hide GO term definitions)

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        PTEN_HUMAN | P60484: 1d5r 2kyl 4o1v 5bzx 5bzz

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