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(-) Description

Title :  TRIANTHRANILATE-LIKE ANALOGUE BOUND TO ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD).
 
Authors :  G. L. Evans, E. N. Baker, J. S. Lott, Tb Structural Genomics Consorti (Tbsgc)
Date :  02 Aug 13  (Deposition) - 21 May 14  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Magnesium Binding, Phosphoribosylpyrophosphate, Prpp, Inhibitor Complex, Tri-Anthranilate Analogue, Tb Structural Genomics Consortium, Tbsgc, Phosphoribosyltransferase, Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Evans, S. A. Gamage, E. M. Bulloch, E. N. Baker, W. A. Denny, J. S. Lott
Repurposing The Chemical Scaffold Of The Anti-Arthritic Dru Lobenzarit To Target Tryptophan Biosynthesis In Mycobacterium Tuberculosis.
Chembiochem V. 15 852 2014
PubMed-ID: 24623674  |  Reference-DOI: 10.1002/CBIC.201300628

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: BL21(DE3)PGROESL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MT2248, MTCY190.03C, RV2192C, TRPD
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
16442Ligand/Ion2,6-BIS[(2-CARBOXYPHENYL)AMINO]BENZOIC ACID
2DMS2Ligand/IonDIMETHYL SULFOXIDE
3GOL1Ligand/IonGLYCEROL
4IMD1Ligand/IonIMIDAZOLE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:138 , ALA A:179 , HIS A:183 , PRO A:184 , TYR A:186 , ARG A:187 , ALA A:190 , ARG A:193 , ARG A:194 , HOH A:877 , HOH A:886BINDING SITE FOR RESIDUE 644 A 600
2AC2SOFTWAREPHE A:274 , ASP A:275 , PHE A:279 , TRP A:336 , HOH A:764 , HOH A:883BINDING SITE FOR RESIDUE GOL A 601
3AC3SOFTWAREARG A:213 , LEU A:305 , GLY A:306 , GLY A:307 , ILE A:351 , ASP A:352 , GLY A:354 , HOH A:723BINDING SITE FOR RESIDUE DMS A 602
4AC4SOFTWAREARG A:42 , ALA A:170 , GLU A:171 , VAL A:172 , GLY A:173 , HOH A:753 , HOH A:892BINDING SITE FOR RESIDUE DMS A 603
5AC5SOFTWARETHR B:108 , ASN B:138 , SER B:145 , ALA B:179 , HIS B:183 , TYR B:186 , ARG B:187 , ALA B:190 , ARG B:193 , ARG B:194 , GLY B:206 , HOH B:777BINDING SITE FOR RESIDUE 644 B 600
6AC6SOFTWAREALA B:236 , LEU B:305 , ILE B:351 , ASP B:352 , GLU B:357BINDING SITE FOR RESIDUE IMD B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M0R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4M0R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M0R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M0R)

(-) Exons   (0, 0)

(no "Exon" information available for 4M0R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............eeeee....hhhhhhhhhhhhhhh...eeeee........hhhhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhh...eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m0r A  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQ 369
                                    34        44        54        64        74        84        94       104    || 117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  
                                                                                                              109|                                                                                                                                                                                                                                                                
                                                                                                               113                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:342
                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.............eeeeee....hhhhhhhhhhhh...eeeee........hhhhhhhhh.....hhhhhhhhhhhh.eeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeeee.hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m0r B  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGTVNLSTMAAIVVAAAGVPVVKHGNRASSLSGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQILE 372
                                    34        44        54        64        74        84        94       104    || 119       129       139|      150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370  
                                                                                                              109|                     139|                                                                                                                                                                                                                                       
                                                                                                               115                      141
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M0R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M0R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M0R)

(-) Gene Ontology  (14, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  4m0r
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  TRPD_MYCTO | P9WFX4
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  TRPD_MYCTU | P9WFX5
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  2.4.2.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTO | P9WFX4: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4giu 4gkm 4ij1 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv
        TRPD_MYCTU | P9WFX5: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4giu 4gkm 4ij1 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4x5e 5bne 5byt 5c1r 5c2l 5c7s

(-) Related Entries Specified in the PDB File

4giu THE SAME PROTEIN COMPLEXED WITH A DIFFERENT INHIBITOR.
4gkm THE SAME PROTEIN COMPLEXED WITH A DIFFERENT INHIBITOR.
4ij1 THE SAME PROTEIN COMPLEXED WITH A DIFFERENT INHIBITOR.