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(-) Description

Title :  BIANTHRANILATE-LIKE ANALOGUE BOUND TO ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (ANPRT; TRPD) IN ABSENCE OF SUBSTRATES.
 
Authors :  G. L. Evans, E. N. Baker, J. S. Lott, Tb Structural Genomics Consorti (Tbsgc)
Date :  20 Dec 12  (Deposition) - 25 Dec 13  (Release) - 21 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.79
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Inhibitor Complex, Bi-Anthranilate Analogue, Tb Structural Genomics Consortium, Tbsgc, Phosphoribosyltransferase, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. L. Evans, S. A. Gamage, E. M. Bulloch, E. N. Baker, W. A. Denny, J. S. Lott
Repurposing The Chemical Scaffold Of The Anti-Arthritic Dru Lobenzarit To Target Tryptophan Biosynthesis In Mycobacterium Tuberculosis.
Chembiochem V. 15 852 2014
PubMed-ID: 24623674  |  Reference-DOI: 10.1002/CBIC.201300628

(-) Compounds

Molecule 1 - ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23A
    Expression System Strain: BL21(DE3) PGROESL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MT2248, MTCY190.03C, RV2192C, TRPD
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773
    Strain: H37RV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
117C2Ligand/Ion2,2'-IMINODIBENZOIC ACID
2GOL4Ligand/IonGLYCEROL
3IMD2Ligand/IonIMIDAZOLE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:86 , ASN A:138 , ALA A:179 , PRO A:180 , HIS A:183 , TYR A:186 , ARG A:187 , ALA A:190 , ARG A:193 , ARG A:194 , GOL A:402 , HOH A:533 , HOH A:696BINDING SITE FOR RESIDUE 17C A 401
2AC2SOFTWAREGLY A:107 , GLY A:206 , PRO A:207 , 17C A:401 , HOH A:697BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWAREARG A:237 , LEU A:305 , GLY A:306 , GLY A:307 , ILE A:351 , GLU A:357BINDING SITE FOR RESIDUE IMD A 403
4AC4SOFTWARETRP A:47 , ASP A:50 , GLU A:342 , ARG A:346BINDING SITE FOR RESIDUE IMD A 404
5AC5SOFTWAREHIS B:91 , ASN B:138 , PRO B:180 , ARG B:181 , HIS B:183 , TYR B:186 , ARG B:187 , ALA B:190 , ARG B:194 , GOL B:403 , HOH B:536 , HOH B:679BINDING SITE FOR RESIDUE 17C B 401
6AC6SOFTWAREALA B:46 , TRP B:47 , ASP B:50 , GLU B:342 , ARG B:346 , HOH B:539BINDING SITE FOR RESIDUE GOL B 402
7AC7SOFTWAREHIS B:91 , PRO B:162 , ARG B:181 , ARG B:194 , 17C B:401BINDING SITE FOR RESIDUE GOL B 403
8AC8SOFTWAREALA B:236 , ARG B:237 , ARG B:238 , LEU B:305 , GLY B:306 , GLY B:307 , ILE B:351 , ASP B:352 , GLU B:357 , HOH B:592 , HOH B:663BINDING SITE FOR RESIDUE GOL B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IJ1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IJ1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IJ1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IJ1)

(-) Exons   (0, 0)

(no "Exon" information available for 4IJ1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhhhh...eeeee....hhhhhhh......hhhhhhhhhhhh.eeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeeee..eeeeeeehhhhhh....hhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ij1 A  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGGTVNLSTMAAIVVAAAGVPVVKHGNRAGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 370
                                    34        44        54        64        74        84        94       104     ||118       128       138 ||    154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       335       345       355       365     
                                                                                                               110|                      140|                                                                                                                                                                                      332|                                    
                                                                                                                115                       147                                                                                                                                                                                       334                                    


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh......hhhhhhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh............eeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhh......hhhhhhhhhhhhheeeeehhhhh..hhhhhhhhhhhh..hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh..eeeeeee............eeeeee......eeeehhhhhh....hhhhh...hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ij1 B  25 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHAHPLPADTVPDDAVDVVGTGNTVNLSTMAAIVVAAAGVPVVKHGNRAGGADTLEALGVRIDLGPDLVARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARRSSVLVVHGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAIVAHAGLSSREWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 370
                                    34        44        54        64        74        84        94       104    || 118       128       138 ||    153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333|      344       354       364      
                                                                                                              109|                       140|                                                                                                                                                                                        333|                                   
                                                                                                               114                        146                                                                                                                                                                                         335
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IJ1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IJ1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IJ1)

(-) Gene Ontology  (14, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  4ij1
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  2.4.2.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRPD_MYCTO | P9WFX4: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4giu 4gkm 4m0r 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv
        TRPD_MYCTU | P9WFX5: 1zvw 2bpq 3qqs 3qr9 3qs8 3qsa 3r6c 3r88 3twp 3uu1 4giu 4gkm 4m0r 4n5v 4n8q 4n93 4owm 4own 4owo 4owq 4ows 4owu 4owv 4x58 4x59 4x5a 4x5b 4x5c 4x5d 4x5e 5bne 5byt 5c1r 5c2l 5c7s

(-) Related Entries Specified in the PDB File

4giu THE SAME PROTEIN COMPLEXED WITH A DIFFERENT INHIBITOR.
4gkm THE SAME PROTEIN COMPLEXED WITH A DIFFERENT INHIBITOR. RELATED ID: TB-RV2192C RELATED DB: TARGETTRACK